Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0267 ATGGCAACTGCGGAGCCAGCTCCTAGTTCCCTTGGTCCTCGGTATGCTCCCGATGACCCCACTCTTCCAAAACCTTGGAAGGGTTTGATTGATGGAAGCACAGGCCTTTTATACTACTGGAATCCTGAAACCAACATCACCCAGTATGAGAAACCAACTGCTTTGCCTCCACCATTGCCTCCAGGGCCACCTCCTGCTGCTGCAACTCCTAAGCTGGCTCCAATTCCAGCGGCCCGAACAATGCAAACAAATGGTAGTCTAGCTCACCATGGGCAGCAAATGAATCAAGCCCAACAGCAGCAGGGGCAGCAAATGATGCAAACCTCTCAGCAGCAGGGGCAACAAATGAGTCAGTTTCCTCAGCAGCATGGACAACTAATGTCTCAGCAGCAGGGTCCACAAATGGCTCAATCTGTGCAACAACCAGGTCCACAATTTGGACAAGCTTTGCAACAGCAGGGGCAACTAACACCACAGCAACTTGGGCAGCAAATAGTGCAGCATCCAGGGCAGCAAATGCAATCACAGTCACTGCAGCAAATGCCCCAACAGCCAAGTCAGCAATTGCCTCAGCAACTTGGGCCACAAACACCACAGCTGCTTGGGCAGCAAACACCACAACATCCAGGCTCACAAATGGCACAACCACAAGTGCATCAATATGCTCATCAGCAGATGCAATATAATGTATATCAGCAACATGTGCCTCCACCAGGGCAACAAAATTCTCAGCAGCAAACTCAGCATATTGCACAGGGTCCACCATTTCAAAAGCAACAAGAATTCAAGACCGGATTCCCACAGAGGGAAGAAATTGATTTTCACCAAGGAAGCCAAGTTGGATTTTCTCCATCACAAATTCAACAGACTGGCACCTCGTCTGCTCAAAACATGCCAGCTGGAGTCAAGTCTTTTCAGATGCCCCAATCAGGTGGTCAGACGGGTCAGGCTCAGCCGTTCAGTGGTCCTTCGGTCAGTATGCAGCAGCAACATGATCCCAGGTTTCAAAATCAGATGGGTCCAGGAATGATGCACAGTCAGCAGCCTAACATTCCTCCGGCTGGATTAAAGAGGGGATATGATGAAAATCCACGTGGAACAGCTGGTAATGATTATTATTTCAGTGCTAACAAGGAAGTGCCACTTTCAGTTTCGCAGCAGCCCAAGCTTGCGGCAATACCCTCAGCAAGAAATCCTCAGGAGATGAGGATGGGTGGTGTCCCAGTTCCGAATGTTCCCCCTGGTCATGCTGGCGGATTGAATGCTGTAGCAGGTCAGGCCATGCATAACATGTACAGCCATGCAACTGGTGGTACAGGATTTTCAAATAATGCTCTGATGAGACCTCCTTCAATGATGATTGGATCTTCAGATATTAGCACTCTCTCGCCAGTTGAAGTTTACTGTCAACAGCATGAAGTTACAGCAACGGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAGATATATTCGGCTGGTTTCTCTTCTCCTACACCAATTCAGGCACAGACATGGCCAATTGCACTACAGGGTAGGGACATTGTGGCAATTGCCAAAACAGGTTCTGGGAAAACATTGGGCTATCTGATCCCTGCCTTCATTCTTCTTAGAAGGCGCCGTAATAATGTACAGAATGGCCCAACTGTGATGGTTTTGGCTCCAACCCGAGAGCTTGCCACACAAATACAAGACGAGACCATCAAGTTTGGCCGATCTTCTAGGGTCTCTTGCGCGTGCTTGTATGGTGGAACTTCAAGGAACGCTCAGCTAAAAGAACTAGATCGAGGAGCAGATGTTGTTGTGGCAACTCCTGGTCGGCTCAATGATATCCTTGAATCGAAAAAGATTGACCTTGGGCAAATTTCACTCCTTGTGCTTGATGAAGCAGATCGAATGTTGGATATGGGTTTTGAACCTCAAATCCGTAAGATTGTTAATGAGATACCTCCACGCAGGCAAACTCTTATGTATACTGCAACCTGGCCCAAAGAAGTGAGAAAAATAGCAGGTGATCTTCTTGTTAATCCTGTTCAAGTGAACATTGGCAGTGTTGATGAACTTGCTGCGAACAAGGCTATCACACAGTATGTTGAAGTAGTTTCACCACCGGAAAAGCAGAGGCGCTTGGAACAGATACTTAGATCCCAAGAACGGGGTTCTAAGGTCATCATCTTCTGTTCCACAAAGAAGTTGTGCGACCAGCTTGCACGTAGCATTGGACGTAACTTTGGGGCTGCTGTAATTCATGGAGACAAGTCTCAGGTGGAGAGAGACTGGGTTCTGAATCAGTTCCGCAGTGGAAAGTCCCCAATCTTAGTTGCCACTGATGTTGCTGCCCGGGGACTTGACATAAAAGACATAAGGGTCGTAATCAACTATGATTTCCCAACTGGAATTGAAGATTACGTCCACCGAATCGGACGAACCGGGAGGGCTGGTGCAACAGGAGTATCATACACATTTTTCTCTGAACAGGACTGCAAATATGCTGCTGATCTGATTAAAGTTCTGGAGGGGGCTAACCAGCGTGTGCCTCCCGAAGTGCGAGATATGGCTTTGCGCAGTGGGCCTGGTTTTGGCAAAGATCGCGGTGGGGTGAACCGTTTTGATTCTGGTGGTGGTGGTGGGCGTTGGGATTCTGGTGGCCGTGGCAGTGGCATGAGGGATGGAGGCTTTGGTGGCCGTGGCAGTGGCATGAGGGATGGAGGCTTTGGGGGCCGTGGAGGCATGAGGGATGGAGGCTTTGGAGGCCGTGGTGGGATGAGGGACGGTGCTGTTGGTGGACACAGTGGAAGAAATGATTTCTTTTCTGGCCGTGGAAACAGGGGGCGTGGATTTGGTGGTCCTGGTGGTGGTAATGTTGGATGGGGCCGGAATGAACGTGGCTTACATGACCGCTATAGCAATATGGATGGACGTGGACGTGGCCGTGGCCGGGGGCGGTTTGATAATAGAAGAGATGTTGCAGATAGGAGTAGAGGCCGAAGTTACAGTTCTAGCCCTGAAAAGGTTCGTACATGGGGTTATAGCAGAAGCAGTAGCCGTAGCCGAAGTCGAAGCAGGAGCAGGAGCCGAAGCTGGTCCCGCAGCCGTAGCCGCAGTCCTAGACGGAGTCACAGCCGTAGCCGCAGTCCCAGAGGCAGCCGCAGCCCTGGACGTAGCCGCAGTCGCAGTCGAAGCCAAGGTTATGACAGATATGAGAGGTCACATGACCGACATTTTGATCAGAAGGACCTTACACAGCCTGAAGCCCAGGTTCCTCCTGAATCAACGATGTCTCCCATGTCACCAGGCACTCAGGCATTTCCACCACAGGAATTTCCAGGAGGTGACCTTGACGCACATCCCCCAGTAGTAGAAACTACTGAGCAAGGGCATCCACTAACTGGAGATGAATCTTTCCATCATCCAGCACCCGAACCCTAA 3462 0.5006 MATAEPAPSSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPPPLPPGPPPAAATPKLAPIPAARTMQTNGSLAHHGQQMNQAQQQQGQQMMQTSQQQGQQMSQFPQQHGQLMSQQQGPQMAQSVQQPGPQFGQALQQQGQLTPQQLGQQIVQHPGQQMQSQSLQQMPQQPSQQLPQQLGPQTPQLLGQQTPQHPGSQMAQPQVHQYAHQQMQYNVYQQHVPPPGQQNSQQQTQHIAQGPPFQKQQEFKTGFPQREEIDFHQGSQVGFSPSQIQQTGTSSAQNMPAGVKSFQMPQSGGQTGQAQPFSGPSVSMQQQHDPRFQNQMGPGMMHSQQPNIPPAGLKRGYDENPRGTAGNDYYFSANKEVPLSVSQQPKLAAIPSARNPQEMRMGGVPVPNVPPGHAGGLNAVAGQAMHNMYSHATGGTGFSNNALMRPPSMMIGSSDISTLSPVEVYCQQHEVTATGENVPPPLMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIFCSTKKLCDQLARSIGRNFGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDCKYAADLIKVLEGANQRVPPEVRDMALRSGPGFGKDRGGVNRFDSGGGGGRWDSGGRGSGMRDGGFGGRGSGMRDGGFGGRGGMRDGGFGGRGGMRDGAVGGHSGRNDFFSGRGNRGRGFGGPGGGNVGWGRNERGLHDRYSNMDGRGRGRGRGRFDNRRDVADRSRGRSYSSSPEKVRTWGYSRSSSRSRSRSRSRSRSWSRSRSRSPRRSHSRSRSPRGSRSPGRSRSRSRSQGYDRYERSHDRHFDQKDLTQPEAQVPPESTMSPMSPGTQAFPPQEFPGGDLDAHPPVVETTEQGHPLTGDESFHHPAPEP* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0267 1153 SMART ww_5 21 54 IPR001202 GO:0005515
Vvi5g0267 1153 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Vvi5g0267 1153 Gene3D - 16 54 - -
Vvi5g0267 1153 SUPERFAMILY WW domain 14 54 IPR036020 GO:0005515
Vvi5g0267 1153 SMART helicmild6 745 825 IPR001650 -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 84 215 - -
Vvi5g0267 1153 FunFam probable ATP-dependent RNA helicase DDX17 454 694 - -
Vvi5g0267 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 691 IPR014001 -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 1011 1027 - -
Vvi5g0267 1153 SMART ultradead3 505 708 IPR014001 -
Vvi5g0267 1153 Pfam DEAD/DEAH box helicase 510 680 IPR011545 GO:0003676|GO:0005524
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 281 328 - -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 1 28 - -
Vvi5g0267 1153 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 454 864 - -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 49 71 - -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 1070 1091 - -
Vvi5g0267 1153 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 486 514 IPR014014 GO:0003724
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 971 1010 - -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 1028 1065 - -
Vvi5g0267 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 842 IPR027417 -
Vvi5g0267 1153 CDD SF2_C_DEAD 705 834 - -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 866 1153 - -
Vvi5g0267 1153 Gene3D - 461 695 IPR027417 -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 53 71 - -
Vvi5g0267 1153 Pfam Helicase conserved C-terminal domain 717 825 IPR001650 -
Vvi5g0267 1153 Pfam WW domain 22 52 IPR001202 GO:0005515
Vvi5g0267 1153 CDD DEADc 497 691 - -
Vvi5g0267 1153 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Vvi5g0267 1153 Gene3D - 696 867 IPR027417 -
Vvi5g0267 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 720 864 IPR001650 -
Vvi5g0267 1153 FunFam ATP-dependent RNA helicase RhlB 695 868 - -
Vvi5g0267 1153 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 637 645 IPR000629 -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 1095 1112 - -
Vvi5g0267 1153 MobiDBLite consensus disorder prediction 234 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0267 Vvi-Chr5 2387017 2393654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0267 484 863 Eukaryotic Initiation Factors Gene Family AT3G19760 34.383 5.99e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0267 K12823 - vvi:100252874 1767.28