Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0259 ATGGAGGATGAGCACATTAGGATTGATGATCTTTCTGCTGAGGTGGGGCCCCTCTTCAGGTGTTCACTTCCAAGTGCCTTCTATGCAGTGTTTGATGGGCATGGAGGCCCTGAAGCAGCAGCTTATATCAAGAGGAATGTCATGAGGCTGTTTTTTGAAGATGTTGATATACCACAAATGTCTGAAATTAATGATATTTTCTTAGAGGAATTGGAAAATTGTCATCGCAAGGCATTTTTATTGGCTGATCTTGCCTTGGCTGATGAATGCACTGTTAGCAGTTCATGTGGAACAACAGCCTTGACCGCTCTAATACTCGGAAGGCATCTACTAGTGGCCAATGTTGGTGACTGTCGAGCAGTTCTCTGCAGGAAAGGACAAGCAGTCCAGATGTCTCAAGATCACAGACCGAGTTATCTCCCAGAGTGCAAGCGTGTCGAGGCCGTAGGTGGTTACATTCTCGACGGGTATCTCAACGATCTCTCCGTCACCCGAGCCCTCGGAGACTGGGGAATGAAATTCCCTGATGGTTCTCCATCACCTCTCATTGCTGAGCCAGACTTTCGACAGATTATTCTAACAGAAGACGATGAGTTCCTGATTATTGGCTGCGATGGGATCTGGGATGCCATGCCGAACCAGCATGCAGTCAGCCTGGTTCGCCGTGGAATGAGGCGGCACAACAACCCGCAGCAGTGTGCTAGAGACCTCGTCATGGAAGCATTACGGCTACACACACCGGATAATCTCACTGCGATTGTCATCTGCTTCTCTTCCCCCGATCACAGTGAGGCATTCCCACCACCACAGAGGCTGAGGTTCAGATGCTGTAGTCTCTCCGAGGAAGCCCGAAACAGGCTGAAGAGCTTGCTGGAAGGCTAA 882 0.4966 MEDEHIRIDDLSAEVGPLFRCSLPSAFYAVFDGHGGPEAAAYIKRNVMRLFFEDVDIPQMSEINDIFLEELENCHRKAFLLADLALADECTVSSSCGTTALTALILGRHLLVANVGDCRAVLCRKGQAVQMSQDHRPSYLPECKRVEAVGGYILDGYLNDLSVTRALGDWGMKFPDGSPSPLIAEPDFRQIILTEDDEFLIIGCDGIWDAMPNQHAVSLVRRGMRRHNNPQQCARDLVMEALRLHTPDNLTAIVICFSSPDHSEAFPPPQRLRFRCCSLSEEARNRLKSLLEG* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0259 293 ProSitePatterns PPM-type phosphatase domain signature. 27 35 IPR000222 GO:0043169
Vvi5g0259 293 PANTHER PROTEIN PHOSPHATASE 2C 1 255 IPR015655 GO:0004722|GO:0006470
Vvi5g0259 293 Gene3D - 1 264 IPR036457 -
Vvi5g0259 293 Pfam Protein phosphatase 2C 1 249 IPR001932 -
Vvi5g0259 293 SMART PP2C_SIG_2 3 257 IPR001932 -
Vvi5g0259 293 FunFam Probable protein phosphatase 2C 22 1 260 - -
Vvi5g0259 293 SUPERFAMILY PP2C-like 1 259 IPR036457 -
Vvi5g0259 293 ProSiteProfiles PPM-type phosphatase domain profile. 1 257 IPR001932 -
Vvi5g0259 293 SMART PP2C_4 2 255 IPR001932 -
Vvi5g0259 293 CDD PP2Cc 1 257 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0259 Vvi-Chr5 2201734 2202729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0259 1 293 PP2C-type Phosphatase Gene Family AT3G62260 63.390 9.34e-134 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0259 K14803 - vvi:100240944 590.882