Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0240 ATGACTCATCCATCCTCTCCAGAGTCTACGGTGCAGCCATTTCCACGAGAGGATCCAGCATCCCCATTTGAGTCGGAGACGAGTCATTCGTCGTCTCCACATGCCATAGTGCAGCAGTTGCTTGTGCTGGAGCATCCGGGATCCCCATCTCAGTCGGAGTTGAGTCATATATCATCTCCGCATGCCACATTGCAGCAGCCATTTCTGTCAGAGATGACTCATCCATTCTCTCCAGAGTCTACGGTGCAGCCACTTCCACGAGAGGATCCAGCATCCCCATTTGAGTTGGAGACGAGTCATTCGTCATCTCCACAGGCCACAGTGCAGCAGCTGCCTGTGCTAGAGCATCCAGGATCCCCATCTCAGTCGGAGTTGAGTCATGTATCCTCTCCGCAGGCCACATTGCAGCAGCCATTTCTGTCAGAGATGACTTATCCATCCTCTCCAGAGTTTACGATGCAGCCACTTCCACGAGAGGATCCAGCATCCCCATTTGAGTCGGAGATGAGTCATTCGTCGTCTCCACAGGCCACAGTGCAGCAGCTGCTTGTGCTGGAGCATTCGGGATCATCATCGCAGTCGGAGTCGAGTGATATATCATCTCCGCAGGCCACATTGCAGCAGCCAGCTCCACATCCATCCTCTTCAGAGTCTATGGTGCAGCCACTTCCACGAGAGGATCCAGTATCCCCATTTGAGTTGGAGACGAGTCATTCGTCGTCTCCACAGGCCACAGTGCAGCAGCTGCCTGTGCTGGAGCATTCGGGATCATCATCGCAGTCGGAGTCGAGTGATATATCATCTCCGCAGGCCACATTGCAGCAGCCAGCTCCACATCCATCCTCTCCAGAGTCTACGGTGCAGCCACTTCCACGAGAGGATCCAGTATCCCCATTCCATTCGGAGACGAGTCATCTGTCGTCTCCGCAGGCCACAGTGCAGCAGGTGCTGGAGCATCCGGGATCCCCATTACAGTCAGAGTCGATTCATATATCATCTCTGCAGGCCACATTGCAGCAGCCAGCTCCACCACCACTGTTCATGCACCCTACGTTGTTGAAATTATGGCTTCGGAGATGGTGGATTATATGCATGATAGCAGCTATTGGGTTGTTATTTTTGATTAGTTGGAGCATTCACACATCACAGAAGAATGACGCGAACATCTGGTGCACCACTCCCAATGCGACAGTTACCAAGGAAAGTAATGCACCTAGCTCCACCGTTCAGGGTGCCCCCATCCTCTTTAGGACTATCATGGCAGCAGTTGATGCAGCACCGGGTGATAATGAATGGCCTTTCTGTATACTGATACAGAAAGGAGTTTATAAAGAAAGAATTGTGATAGAAAGAAATAAAAGAAATTTGGTTTTGGTGGGGGAAGGAATTAACAAAACCATCATATCATCAAATGGAGCTGTCTTGTCCACCGATCGCTATATTTCAGAACTCGCAACCATTTGGGTTCTAGGAAAAAGATTCAAGGCAATGGATATTTCATTTGAAAACATGGGAGCTGATCAACTAGAGAGTGTTGCATTGAAAAATTCAGGAGATCAGTCTATCTTCCATAGATGCAGCTTCATGTCACAACAAGTCTCCATTCATAGTGATCATGTGGGGCAACAACTCTACCATGATTGCTATATTAGTGGCTCACAACACTTGATCTATGGAGATGGACATGCCATGTTTCAAAGAAGTACCATCCATGTAAATAATTTGAAGCCAGAAGTGGGGGCTGTGATTGCACTGCAAGAAAGAAGAAGCATAGTAGTGAAGGAAACATTCGCAGCAAGACAAGGCTTTGGCCACAAGGCAGCAGAAGAGGTATGGGCCTTTACTATTTGTTATCAGTCCCTCATGGAAGTATAG 1875 0.4891 MTHPSSPESTVQPFPREDPASPFESETSHSSSPHAIVQQLLVLEHPGSPSQSELSHISSPHATLQQPFLSEMTHPFSPESTVQPLPREDPASPFELETSHSSSPQATVQQLPVLEHPGSPSQSELSHVSSPQATLQQPFLSEMTYPSSPEFTMQPLPREDPASPFESEMSHSSSPQATVQQLLVLEHSGSSSQSESSDISSPQATLQQPAPHPSSSESMVQPLPREDPVSPFELETSHSSSPQATVQQLPVLEHSGSSSQSESSDISSPQATLQQPAPHPSSPESTVQPLPREDPVSPFHSETSHLSSPQATVQQVLEHPGSPLQSESIHISSLQATLQQPAPPPLFMHPTLLKLWLRRWWIICMIAAIGLLFLISWSIHTSQKNDANIWCTTPNATVTKESNAPSSTVQGAPILFRTIMAAVDAAPGDNEWPFCILIQKGVYKERIVIERNKRNLVLVGEGINKTIISSNGAVLSTDRYISELATIWVLGKRFKAMDISFENMGADQLESVALKNSGDQSIFHRCSFMSQQVSIHSDHVGQQLYHDCYISGSQHLIYGDGHAMFQRSTIHVNNLKPEVGAVIALQERRSIVVKETFAARQGFGHKAAEEVWAFTICYQSLMEV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0240 624 Pfam Pectinesterase 416 590 IPR000070 GO:0030599|GO:0042545
Vvi5g0240 624 SUPERFAMILY Pectin lyase-like 416 589 IPR011050 -
Vvi5g0240 624 MobiDBLite consensus disorder prediction 1 324 - -
Vvi5g0240 624 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 410 590 - -
Vvi5g0240 624 MobiDBLite consensus disorder prediction 300 324 - -
Vvi5g0240 624 MobiDBLite consensus disorder prediction 95 151 - -
Vvi5g0240 624 Gene3D - 377 603 IPR012334 -
Vvi5g0240 624 MobiDBLite consensus disorder prediction 233 281 - -
Vvi5g0240 624 MobiDBLite consensus disorder prediction 166 221 - -
Vvi5g0240 624 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0240 Vvi-Chr5 2073948 2076962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0240 378 571 Carbohydrate Esterase AT3G10720 34.951 9.49e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0240 K01051 - vvi:104879268 1130.93