Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0232 ATGCTAAGCAGACTGATTAAAAAATCTGGGAAGAAAGCTCCCAAAACCCCTGCCACTCCTCAAGTGCAGAGCACTGGAAGCAAGACACTGTTTGTTAGCAATCTATCTTTTAGTATTCAAAAAGAGGATGTTGAGCATTTCTTTAAAGATGCCGGTGAAGTTGTTGATGTCCGTTTCTCTTCAGATGCAGACGGGAGGTTCAAGGGCTTTGGTCATGTTGAGTTTGCTACTCCCGAAGCAGCACAGAAGGCTCTCAAAGTGAATGGTAAAGACTTATTGGGTCGTGCTGTCAGACTTGATTTGGCCCGTAAAAGGGGCGCATATACTCCATATAACGGAAAAGAAAGCAATTCATTCCAAAAGGGAGGGAGTCAGGCACAGACAATATTTGTTCGGGGCTAA 402 0.4428 MLSRLIKKSGKKAPKTPATPQVQSTGSKTLFVSNLSFSIQKEDVEHFFKDAGEVVDVRFSSDADGRFKGFGHVEFATPEAAQKALKVNGKDLLGRAVRLDLARKRGAYTPYNGKESNSFQKGGSQAQTIFVRG* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0232 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 104 IPR000504 GO:0003723
Vvi5g0232 133 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 119 - -
Vvi5g0232 133 FunFam Nucleolin 2 2 112 - -
Vvi5g0232 133 SMART rrm1_1 29 100 IPR000504 GO:0003723
Vvi5g0232 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 97 IPR000504 GO:0003723
Vvi5g0232 133 MobiDBLite consensus disorder prediction 1 25 - -
Vvi5g0232 133 SUPERFAMILY RNA-binding domain, RBD 18 121 IPR035979 GO:0003676
Vvi5g0232 133 Gene3D - 3 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0232 Vvi-Chr5 1995146 1995547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0232 13 99 Eukaryotic Initiation Factors Gene Family AT4G34110 30.337 2.99e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0232 K11294 - vvi:100262769 244.202