Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0230 ATGACTCATCCATCCTCTCCAGAGTCTACGGTGCAGCCATTTCCACGAGAGGATCCAGCTTCCCCATTTGAGTCAGAGACGAGTCATTCGTCGTCTCCACAGACCATAGTGCAGCAGTTGCCTGTGCTGGAGCATCCGGGATCCTCATCTCAGTCGGAGTTGAGTCATATATCATCTCCGCATGCCACATTGCAGCAGCCATTTCTGTCAGAGATGACTCATCCATCCTCTCCAGAGTCTACGGTGCAGCCACTTCCACGAGAGGATCCAGCATCCCCATTTGAGTCGGAGACGAGTCATTCGTCATCTCCACAGGCCACAGTGCAGCAGCTGCCTGTGCTAGAGCATCCAGGATCCCCATCTCAGTCGGAGTTGAGTCATGTATCCTCTCCGCAGGCCACATTGCAGCAGCCATTTCTGTCAGAGATGACTCATCCATCCTCTCCAGAGTCTACGGTGCAGCCACTTCCAGGAGAGGATCCAGCATCCCCATTTGAGTCGGAGACGAGTCATTCGTCGTCTCCACAGGCCACAGTGCAGCAGCTGCCTGTGCTGGAGCATCCGGGATCATCATCGCAGTCGGAGTCGAGTGATATATCATCTCCGCAGGCCACATTGCAGCAGCCAGCTCCACATCCATCCTCTCCAGAGTCTACGGTGCAGCCACTTCCACGAGAGGATCCAGTATCCCCATTTGAGTCGGAGACGAGTCATTCGTCGTCTCCACAGGCCACAGTGCAGCAGCTGCCTGTGCTGGAGCATCCGGGATCATCATCGCAGTCGGAGTCGAGTGATATGTCATCTCCGCAGGCCACATTGCAGCAGCCAGCTCCACATCCATCCTCTCCAGAGTCTACGGTGCAGCCACTTCCACGAGAGGATCCAGTATCCCCATTCCATTCGGAGACGAGTCTTCTGTCGTCTCCACAGGCCACATTGCAGCAGCCAGCTCCACCACCACTGTTCATGCACCTTACGTTGTTGAAGTTATGGCTTCGGAGATGGTGGATTATATGCATGATAGCAGCTATTGGGTTCTTATTTTTGATTAGTTGGAGCATTCACACATCACAGAAGAATGATGCGAACATCTGGTGCACCACTCCCAATGCGACAGTTACCAAGGAAAGTAATGCACCTAGCTCCACCGAGATTCAGGGTGCCCCCATCCTCTTTAGGACTATCATGGCAGCGGTTGATGCAGCACCGGGTGATAATGAATGGCCTTTCTGTATACTGATACAGAAAGGAGTTTATAAAGAAAGAATTGTGATAGAAAGAAATAAAAGAAATTTGGTTTTGGTGGGGGTAGGAATTAACAAAACCATCATATCATCAAATGGAGCTGTCATGTCCACTGATCGCTATATTTCAGAACTCGCAACTATTTGGGTTCTAGGAAAAAGATTCAAGGCAATGGATATTTCATTTGAAAACATAGGAGCTGATCAACTAGAGAGTGTTGCATTGAAAAATTCAGGAGATGAGTCTATCTTCCATAGATGCAGCTTCATGTCACAAGTAGTCTCGATTCATAGTGATCATGTGGGGCAACAACTCTACCATGATTGCTATATTAGTGGCTCACAACACTTGATCTATGGAGATGGACATGCCATGTTTCAAAGAAGTACCATCCATGTAAATAATTTGAAGCCAGAAGTGGGGGCTGTGATTGCACTGCAAGAAAGAAGAAGCATAGTAGTGAAGGAAACATTCGCAGCAAGACAAGGCTTTGGCCACAAGGCAGCAGAAGAGGGTATGGGCCTTTACTATTTGTTATCAGTCCCTCATGGAAGTATAGGCGAGCATTATGCTGTCATACCACAGGCATGCCTTCGGACTCGGCGAGCATTACAATTCTGTGATCCCTGGCCTGGTGAGATAGGTACCGTCATTCATATGTGA 1908 0.4927 MTHPSSPESTVQPFPREDPASPFESETSHSSSPQTIVQQLPVLEHPGSSSQSELSHISSPHATLQQPFLSEMTHPSSPESTVQPLPREDPASPFESETSHSSSPQATVQQLPVLEHPGSPSQSELSHVSSPQATLQQPFLSEMTHPSSPESTVQPLPGEDPASPFESETSHSSSPQATVQQLPVLEHPGSSSQSESSDISSPQATLQQPAPHPSSPESTVQPLPREDPVSPFESETSHSSSPQATVQQLPVLEHPGSSSQSESSDMSSPQATLQQPAPHPSSPESTVQPLPREDPVSPFHSETSLLSSPQATLQQPAPPPLFMHLTLLKLWLRRWWIICMIAAIGFLFLISWSIHTSQKNDANIWCTTPNATVTKESNAPSSTEIQGAPILFRTIMAAVDAAPGDNEWPFCILIQKGVYKERIVIERNKRNLVLVGVGINKTIISSNGAVMSTDRYISELATIWVLGKRFKAMDISFENIGADQLESVALKNSGDESIFHRCSFMSQVVSIHSDHVGQQLYHDCYISGSQHLIYGDGHAMFQRSTIHVNNLKPEVGAVIALQERRSIVVKETFAARQGFGHKAAEEGMGLYYLLSVPHGSIGEHYAVIPQACLRTRRALQFCDPWPGEIGTVIHM* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0230 635 MobiDBLite consensus disorder prediction 165 214 - -
Vvi5g0230 635 Gene3D - 351 582 IPR012334 -
Vvi5g0230 635 MobiDBLite consensus disorder prediction 24 83 - -
Vvi5g0230 635 SUPERFAMILY Pectin lyase-like 392 565 IPR011050 -
Vvi5g0230 635 MobiDBLite consensus disorder prediction 233 281 - -
Vvi5g0230 635 Pfam Pectinesterase 392 566 IPR000070 GO:0030599|GO:0042545
Vvi5g0230 635 MobiDBLite consensus disorder prediction 1 313 - -
Vvi5g0230 635 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 388 566 - -
Vvi5g0230 635 MobiDBLite consensus disorder prediction 95 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0230 Vvi-Chr5 1971491 1974561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0230 392 547 Carbohydrate Esterase AT3G10720 38.509 4.70e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0230 K01051 - vvi:104879223 1059.67