Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0225 ATGGAGGATGAACCGTGCTTCGAGTGCCTTCAGCGTCGATTTCAATCCGATTTCTCCAACAAACTGATATTCTCCTATGGCGTCTCCGATTCTGGCCTCCCCTTCGGCTCTGGTGCCGTTGTTCAGATGGCCAATCCTAATGGAGAGGCGGCGTCAGCTGAGTTCATATTGGTGTGTATGCCCACTCATGCTAACGATTGCCTCGCCAAATACGTTGATGAGTATTTTATGGAAAATCCTGAAGGCAGTTACAAGGAGGGGATTGGTGACATCATTGTATCAGAAATAAATCAACATCAAGCAGAGGTTGGTGTTCCAAATCTCACTGATGAAACTGCTTCTTCAGATTCTTTATTGAACAGATCTGAGTCTTTGTTGAATGGTGATAGAAAAATAATCCTGGCTGGATTAAGGTCCAGAAGTTCTAAATGTAACCATTCCAGTAGGTTTTCTTGTTCAAGGATGATTAGCGCATTGGCCCCAGTTGCTCGGATTGGCATTTGTTCTGACTTCATATTTGAAGAGCTTGCTTCCGACTTCTCATCTGGGTCTGTGGAAGATCATGTATTGTGCTCACTTAGCCTTCTGATTGAAGGAAAAGCAACCGGTCGAGATAGCATAAACTTTCTTAATTTAGTTGGCATACCATCATTCAATGAGGATATCTTCCCTGGTTGTCTGATGCATCCAAACATAGCCCCCATTCTTGGAATGCTAAAAACATCTGATTATGTTAATTTAGTGCTTCCAAAAGCTCCTTATACCTTGGAAAACATTCTTCATTATAGCCCCAATGCCTTAAATTCCGAGTGGCATATGAAGTTTTTGATTTATCAGCTACTCTCTGCTCTAGCTTATATCCATGGTTTAGGGGTTACCCATGGCAATATATGCCCATCTAATGTAATGTTGACTGATTCATGCTGGTCTTGGCTGCGCATTTGTGATAACCCATGGTTAAGGTCCAATCTAAGTTCAGGAAATGAAGAATGTGCCATTATTTCCTCCTCAAGGTTGGGTTGTTTCATTGCAGGCTGTCCTTCTCAAGATCTTTATGCTGATTTGAAGCTTTCCCCATCTATAGATTGGCATTTGAATTTTGATCGGTGGTGGAGGGGAGATCTAAGTAATTTTGAGTACCTACTCATCTTAAACAGGTTAGCTGGGAGAAGGTGGGGAGATCACACATTCCACACGGTAATGCCATGGGTAATAGATTTCAGCATAAAACCTGATGAGAATGTTGATGAAGGGTGGCGGGATTTAAGCAAGAGCAAATGGCGGTTGGCAAAAGGTGATGAGCAATTGGACTTCACGTATTCAACTTCTGAAATCCCACATCATGTATCAGAGGAGTGCCTTTCTGAACTTGCTGTATGTAGTTATAAAGCAAGGAGGTTACCTTTGAGTGTTCTGCGTCTGGCTGTCCGTTCAGTCTATGAGCCTAATGAGTATCCTTCCAATATGCAAAGACTTTATCAATGGACCCCAGATGAATGCATCCCAGAGTTCTACTGTGATCCTCAAATTTTTCGTTCTCTGCACTCTGGTATGGCTGATTTAGCAGTACCCTCATGGGCAAGAAGTCCTGAGGAATTCATTAAAGTGCATCGAGATGCGTTAGAAAGTGACCGAGTCTCATGCCAAATCCATCATTGGATTGATATCACCTTTGGATACAAAATGTCCGGCCAGGCAGCTTTGGCTGCCAAGAATGTTATGCTGCCTTCAACAGAGCCCATGATGCCAAGGTCGGTGGGACGCCGCCAGCTCTTCACTCAACCTCACCCTACTCGTCAATGTGCTACCTGGAAAACAGGTAACAGCACCAATAAATTAGCTGTTCATCAATGCCAAGGGAGTGAATTAGTGGGTGAGAAACCTCTCCTTCCTCAAACTGTGTATTTACAAGACTTAGAAGAAGCAGCTGCATTTTCTGAACATGCTTGGCATTTGAGTCCTCTCTATTGCTATCATCCCAAAAATCTTGCTGATGATGTCTCATCTGTAGAAGAGCCACCAAGTGAGAGTTCTAAAAAAGGCATATCTAAGACACCTGAACTTGGCAACAAGAATGGGGTCCCATCTGAGATTGATTTAAATTATCTTCTTGATTATATTGAAGTGGATGATGAAGGTTCTGTGGGATATCAAGAGTTATTACTTTGGAGGCAGAAGTCATATTGTTCAAAGGCTCTTTCTGAAGATGTTGCCAAGGACATATTTTCTGTTGGTTGCATTTTAGCAGAACTTCACTTGAGGAGGCCACTTTTTGATTCAACATCACTAGCCATGTACTTAGAGAATGGCATCTTACCTGGATTAATACAGGAACTTCCTCCTCACACTAAAGCACTTGTTGAAGCATGCATTCTGAAGGATTGGAGAAGGAGGCCCTCTGCCAAAAGCCTTTTCGAATCTCCATACTTTCTCACAACAGTCAGGTCATCCTACTTGTTTGTTGCCCCACTTCAGCTTTTAGCAAAAGATGGATCGCATCTTCGATATGCTGCAAATTTTGCAAAACAAGGAGCCTTGAAAGCAATGAGAGCATTTGGAGCTGAAATGTGTGCTCCCTATTGCTTGCCACTTGTGGTGGCTCCATTATCAGATACTGAGGCCGAGTGGGCTTATATACTTCTAAAAGAGTTCTTAAAATGTTTGAAGTCAAAAGCAGTAAAGTCATTGGTCTTGCCTGCCATCCAGAAGATTCTACAGGCTAGTTATTCACATTTGAAAGTTTCTCTTCTCCAAGACTCATTTGTGCGGGAGGTATGGAACCGGGTTGGTAAACAAACATATCTGGAGATGGTGCATCCTTTGGTGATATCAAATTTGTTTGTTGCTCCTCATAAGAGTTCAGCTTCTGCTGCTTCTGTTCTGCTGATTGGCTTTAGTGAAGAGCTTGGAGTACCGATAACAGTTCATCAGACAGTCTTGCCTCTGATTCACTGTTTTGGGAAAGGACTCTGCACTGATGGAATTGATGTGCTGGTTAGAATAGGTGGACTTTTTGGGGAGAACTTCATTGCCAGACATATTCTACCATTGCTGAAAAACGTTGTCCGTTATTGTATTGATGTTTCATCTATGAATAAGCCTGAGCCTATGCAGAGCTGGAGTGCTTTAGCCCTTATTGATTGTCTAATGGCATTCGAAGGTCTTGTTACAGTCTTGCCAAAGGAGGCAGTTGTAAAGGAGCTTACTGAAGATCAAAGTTTTGTGCATGTTATGGTCCTTATGCAGGCGAATTTGGAAATTCCAGTGCTCCAGGTTGCTGCTAACTATCTTATTGCACTCTGTCAGCGGATTGGACCAGATTTAACAGCTTTTCATGTTCTGCCAAAACTCAAAGAGCTGTTTGATGAGCTTGCTTTTTCTCAGGAAACTGCCAATGGATCTGGCTCTCTAGGAAGAGCCTTGAAGTTTTCCAAATCAAAAGTAGATGAGGATGCTCAAATGGGAAGCCGTATGGACCTTGTGTTGCTTTTATATCCTTCTTTTGCATCTCTTCTTGGAATAGAGAAACTTCGCCAGTGTTGTGCTACATGGTTGCTTCTTGAACAATACCTTCTACGCTGTCATAATTGGAAGTGGGAACATACAGGTGAATCATCTCGAACTGGTGCAGAAAATATAAGTGCTAATAGGCCCATTTTCAGCAAAGGCTCTGTGTCTGAGTACAATCCTGCTAAACTGTTGCTTAATGGAGTTGGGTGGTCAATACCACAGTCACAAGGAATTAGAGGTGCTAAAAACTTGATTGCTCAAAAAAGGTTTTATAGTCTTCATCAGGACCCAGTTCAAAGGCATGCAGCATCTTCAAGCATTGGGAAGCGTGAACCCTGGTTCTGGTTCCCTAGTCCCGCTGCTAGCTGGGATGGTCCTGATTTTCTTGGTCGTGTAGGGGGTCTAAAAGATGAACTTCCATGGAAGATCAGAGCCTCTGTTATACACTCTGCACGTGCCCATCATGGAGCTCTGAGATCTTTAGCTGTTTGCCAAGATGAGTGTACAGTTTTCACTGCTGGAGTTGGCCCAGGATTCAAGGGAACTATTCAGAGGTGGGAATTGACCGGAATTGACTGCGTCTCTGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAGTATTTTCTGAACCATCAGCAGACTCTCTGCATCTTGCAAGTCCTTTATCTTCTGCATCAAAGATTAACAATGACCAAGCCAATATGCTGAATCCCAATTCATTGACAAGTGGGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGATTCATTGATGTTGTGCAAGGTCAAAAACTTCATTTGTGGAGAAGTGAATCTATCGATTCTGGGTTCCCTTCTTTTGTCTCTGCTGTTTGTTCATGTGGATCTGACAGAATGCAAGTAGATGGAGCTTCTGCTTTACCATCTTGGATTGCAGCTGGATTTAGTTCTGGTAGTTGCAGGTTGCTTGATGTGAGGAGTGGCAATCTGATTGCCTCTTGGCGTGCTCATGATGGATATATCACAAAGTTGGCTGCACGGGAGGATCATCTGCTCGTGTCCAGCTCTCTTGATAGGACTTTACGAATTTGGGACCTCAGAAGGGGTTGGTCAGCAGAACCTATCATTTTCAGAGGTCATACAGATGGTGTATCTGGATTTTCTGTATGGGGCCAAGATATAATTTCAATTTCCAAAAACAAGATTGGACTCTCTTCTTTATCCAGATCTGCAGATGAGGAAGGGCAGCATTGGGTAACACCTCAGAAACTTTACATGCCAGATCGCGGAACAAGACACTTGTCAGTGCTATCAAGCATAAGCATTCTGCCCTTCTCACGTTTATTTCTTGTTGGAACTGAAGATGGTTACCTGAGAATCTGCTGTTAG 5031 0.4283 MEDEPCFECLQRRFQSDFSNKLIFSYGVSDSGLPFGSGAVVQMANPNGEAASAEFILVCMPTHANDCLAKYVDEYFMENPEGSYKEGIGDIIVSEINQHQAEVGVPNLTDETASSDSLLNRSESLLNGDRKIILAGLRSRSSKCNHSSRFSCSRMISALAPVARIGICSDFIFEELASDFSSGSVEDHVLCSLSLLIEGKATGRDSINFLNLVGIPSFNEDIFPGCLMHPNIAPILGMLKTSDYVNLVLPKAPYTLENILHYSPNALNSEWHMKFLIYQLLSALAYIHGLGVTHGNICPSNVMLTDSCWSWLRICDNPWLRSNLSSGNEECAIISSSRLGCFIAGCPSQDLYADLKLSPSIDWHLNFDRWWRGDLSNFEYLLILNRLAGRRWGDHTFHTVMPWVIDFSIKPDENVDEGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSEECLSELAVCSYKARRLPLSVLRLAVRSVYEPNEYPSNMQRLYQWTPDECIPEFYCDPQIFRSLHSGMADLAVPSWARSPEEFIKVHRDALESDRVSCQIHHWIDITFGYKMSGQAALAAKNVMLPSTEPMMPRSVGRRQLFTQPHPTRQCATWKTGNSTNKLAVHQCQGSELVGEKPLLPQTVYLQDLEEAAAFSEHAWHLSPLYCYHPKNLADDVSSVEEPPSESSKKGISKTPELGNKNGVPSEIDLNYLLDYIEVDDEGSVGYQELLLWRQKSYCSKALSEDVAKDIFSVGCILAELHLRRPLFDSTSLAMYLENGILPGLIQELPPHTKALVEACILKDWRRRPSAKSLFESPYFLTTVRSSYLFVAPLQLLAKDGSHLRYAANFAKQGALKAMRAFGAEMCAPYCLPLVVAPLSDTEAEWAYILLKEFLKCLKSKAVKSLVLPAIQKILQASYSHLKVSLLQDSFVREVWNRVGKQTYLEMVHPLVISNLFVAPHKSSASAASVLLIGFSEELGVPITVHQTVLPLIHCFGKGLCTDGIDVLVRIGGLFGENFIARHILPLLKNVVRYCIDVSSMNKPEPMQSWSALALIDCLMAFEGLVTVLPKEAVVKELTEDQSFVHVMVLMQANLEIPVLQVAANYLIALCQRIGPDLTAFHVLPKLKELFDELAFSQETANGSGSLGRALKFSKSKVDEDAQMGSRMDLVLLLYPSFASLLGIEKLRQCCATWLLLEQYLLRCHNWKWEHTGESSRTGAENISANRPIFSKGSVSEYNPAKLLLNGVGWSIPQSQGIRGAKNLIAQKRFYSLHQDPVQRHAASSSIGKREPWFWFPSPAASWDGPDFLGRVGGLKDELPWKIRASVIHSARAHHGALRSLAVCQDECTVFTAGVGPGFKGTIQRWELTGIDCVSGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKLIKVFSEPSADSLHLASPLSSASKINNDQANMLNPNSLTSGILTSAFDGSLYTCMHLLESVEKLVVGTGNGSLRFIDVVQGQKLHLWRSESIDSGFPSFVSAVCSCGSDRMQVDGASALPSWIAAGFSSGSCRLLDVRSGNLIASWRAHDGYITKLAAREDHLLVSSSLDRTLRIWDLRRGWSAEPIIFRGHTDGVSGFSVWGQDIISISKNKIGLSSLSRSADEEGQHWVTPQKLYMPDRGTRHLSVLSSISILPFSRLFLVGTEDGYLRICC* 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0225 1676 ProSitePatterns Trp-Asp (WD) repeats signature. 1566 1580 IPR019775 -
Vvi5g0225 1676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1548 1583 - -
Vvi5g0225 1676 SUPERFAMILY Protein kinase-like (PK-like) 736 839 IPR011009 -
Vvi5g0225 1676 Gene3D - 1311 1491 IPR015943 GO:0005515
Vvi5g0225 1676 SMART Beach_2 367 599 IPR000409 -
Vvi5g0225 1676 Gene3D BEACH domain 364 599 IPR036372 -
Vvi5g0225 1676 SUPERFAMILY BEACH domain 355 599 IPR036372 -
Vvi5g0225 1676 PANTHER GH12955P 3 1676 - -
Vvi5g0225 1676 Pfam WD domain, G-beta repeat 1542 1579 IPR001680 GO:0005515
Vvi5g0225 1676 Pfam WD domain, G-beta repeat 1362 1397 IPR001680 GO:0005515
Vvi5g0225 1676 SUPERFAMILY Protein kinase-like (PK-like) 227 317 IPR011009 -
Vvi5g0225 1676 ProSiteProfiles Protein kinase domain profile. 119 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0225 1676 SMART WD40_4 1541 1579 IPR001680 GO:0005515
Vvi5g0225 1676 SMART WD40_4 1360 1397 IPR001680 GO:0005515
Vvi5g0225 1676 SMART WD40_4 1634 1676 IPR001680 GO:0005515
Vvi5g0225 1676 SMART WD40_4 1442 1479 IPR001680 GO:0005515
Vvi5g0225 1676 SMART WD40_4 1314 1357 IPR001680 GO:0005515
Vvi5g0225 1676 CDD Beach 368 599 IPR000409 -
Vvi5g0225 1676 Gene3D Transferase(Phosphotransferase) domain 1 712 818 - -
Vvi5g0225 1676 SUPERFAMILY WD40 repeat-like 1317 1674 IPR036322 GO:0005515
Vvi5g0225 1676 SMART serkin_6 171 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0225 1676 Pfam Protein kinase domain 227 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0225 1676 Pfam Beige/BEACH domain 369 580 IPR000409 -
Vvi5g0225 1676 ProSiteProfiles BEACH domain profile. 355 622 IPR000409 -
Vvi5g0225 1676 MobiDBLite consensus disorder prediction 667 690 - -
Vvi5g0225 1676 Gene3D - 1500 1676 IPR015943 GO:0005515
Vvi5g0225 1676 Gene3D Transferase(Phosphotransferase) domain 1 224 329 - -
Vvi5g0225 1676 ProSiteProfiles Trp-Asp (WD) repeats profile. 1548 1583 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0225 Vvi-Chr5 1938861 1950382 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Vvi5g0225 Beach 2.6e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0225 K17601 - vvi:100853627 3376.26