Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0222 ATGGATAGTAATAAGGACGAAGCATTGAGATGCGTTCGTATTGCCGAGGAAGCAATTGTTTCTGGAAACAAGCAGCGCGCGCTTAAATTCATTGGAATTGCGCAGAGGCTCAACCATAATCTTTCGGTCGGTGATCTTTTGGCTGCATGTGAGAGGCTTGATGAGGCTGCGGCGCCCCCGCCACCGGCTGTGGATGGGCATGGTGTTGATCAGAATAGGAATGAGTCTGTTCGAAGTAAGGTTGGCGAGGTTTCGAATGGGGAGCAGAATTATACAGAGGAACATGTGGAATTGATAAGGAAGATTAGGAGGAATAAGGACTATTATGGGATTCTTGGTGTAGAGAAGAGTTGTTCGGTGGAGGAGATTAGAAAGGCTTATAGGAAATTGTCGTTAAAAGTTCATCCTGATAAGAACAAGGCCCCAGGTTCTGAAGAAGCGTTTAAGAAAGTGTGCAAGGCTTTCAAGTGCTTGAGTGAAGAGGAATCAAGGAGGCAGTATGATCAAACGGGTCTGGTTGAAGAATTTGAGTACAATCAGCAGCACAATGTTAGGCGGCGGAGGAGGAGGACTGGGCATGACTTCTTTGATGATGATTTTGATCCTGATGAGATATTCAGGTCATTCTTTGGTCAGACAGAGATGTTCCGCGCAAACTATGTTTATAGGACTAGAGACATGGGTGGCCAACAGAGAGAGAATTTTCATGGTGGTGGACCTAATATTATGGTTCTTCTTCAGATATTGCCCTTCTTGTTAATTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATGGTTCTTCTTCAGATATTGCCCTTCTTGTTAA 870 0.4103 MDSNKDEALRCVRIAEEAIVSGNKQRALKFIGIAQRLNHNLSVGDLLAACERLDEAAAPPPPAVDGHGVDQNRNESVRSKVGEVSNGEQNYTEEHVELIRKIRRNKDYYGILGVEKSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSEEESRRQYDQTGLVEEFEYNQQHNVRRRRRRTGHDFFDDDFDPDEIFRSFFGQTEMFRANYVYRTRDMGGQQRENFHGGGPNIMVLLQILPFLLIFXXXXXXXXXXXXXXXXXXXXXXXRWFFFRYCPSC* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0222 289 CDD DnaJ 107 159 IPR001623 -
Vvi5g0222 289 SMART dnaj_3 106 163 IPR001623 -
Vvi5g0222 289 Coils Coil 279 279 - -
Vvi5g0222 289 Pfam DnaJ domain 107 168 IPR001623 -
Vvi5g0222 289 SUPERFAMILY Chaperone J-domain 103 211 IPR036869 -
Vvi5g0222 289 Gene3D DnaJ domain 104 221 IPR036869 -
Vvi5g0222 289 FunFam Chaperone protein dnaJ 49 103 221 - -
Vvi5g0222 289 ProSiteProfiles dnaJ domain profile. 107 171 IPR001623 -
Vvi5g0222 289 PANTHER AT29763P-RELATED 1 256 - -
Vvi5g0222 289 PRINTS DnaJ domain signature 109 127 IPR001623 -
Vvi5g0222 289 PRINTS DnaJ domain signature 143 163 IPR001623 -
Vvi5g0222 289 PRINTS DnaJ domain signature 127 142 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0222 Vvi-Chr5 1910547 1911416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0222 101 168 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.111 9.25e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0222 K09518 - vvi:100267066 488.034