Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0212 ATGAGTAGAGGCAGCGCAACGGGTGGGCCCAAGGGCAAGAAGAAGGGAGCCACCTTCACCATCGACTGTGCCAAGCCGGTTGAGGATAAGATCATGGACATCGCCTCGCTCGAAAAATTCCTTCAGGAGCGCATCAAGGTCGGCGGCAAGGCCGGTGCTCTGGGAGATTCCGTCACCGTTACACGTGACAAGAGCAAGATCACCGTCACCTCCGAAAGCAGTTTCTCTAAACGGTATCTGAAATATTTGACAAAGAAATACTTGAAGAAACACAACGTGAGAGATTGGCTTCGGGTAATTGCTTCCAACAAGGATCGCAATGTGTATGAATTGCGATACTTCAACATTGCTGAGAATGAGGGTGAGGATGAAGACTGA 378 0.4974 MSRGSATGGPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSESSFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEDED* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0212 125 Pfam Ribosomal L22e protein family 15 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vvi5g0212 125 PANTHER 60S RIBOSOMAL PROTEIN L22 2 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vvi5g0212 125 Gene3D - 7 125 IPR038526 -
Vvi5g0212 125 FunFam 60S ribosomal protein L22-2 6 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0212 Vvi-Chr5 1801109 1805025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0212 1 125 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 84.800 1.13e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0212 K02891 - vvi:100260136 225.713