Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0193 ATGGGTATCGATTTAGTCGCCGGCGGCAAAAGCAAAAAGACGAAGCGCACCGCTCCCAAATCTGATGATATCTACCTCAAGCTCCTAGTCAAGCTGTATCGTTTTCTGGTACGGAGAACCGGAAGCAAGTTCAATGCCGTGATACTGAAGCGTCTGTTCATGAGCAAGATCAACAAACCTCCGATGTCTCTCTCCAGGTTGATTCGTTATATGCAAGGAAAGGAGGACAAGATTGCAGTGCTCGTGGGAACGGTAACGGATGATCTTCGGGTCTATGAGGTGCCGACATTGAAGGTAACTGCTCTGAGGTTCACGGAGAGGGCGAGAGCAAGGATCGAGAAGGCCGGTGGAGAGTGCTTGACGTTCGACCAACTGGCTCTCAGGGCTCCTCTCGGTCAGAACACGCTAACAAATCAAGAAAACTCAAGGCCCAAACCTCTATGA 444 0.5045 MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKPPMSLSRLIRYMQGKEDKIAVLVGTVTDDLRVYEVPTLKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTLTNQENSRPKPL* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0193 147 FunFam 60S ribosomal protein L18 1 145 - -
Vvi5g0193 147 Pfam Ribosomal protein 60S L18 and 50S L18e 2 136 IPR021131 -
Vvi5g0193 147 Gene3D - 1 144 - -
Vvi5g0193 147 PANTHER 60S RIBOSOMAL PROTEIN L18 1 138 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vvi5g0193 147 SUPERFAMILY Ribosomal proteins L15p and L18e 20 136 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0193 Vvi-Chr5 1597955 1599195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0193 3 143 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 75.000 1.85e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0193 K02883 - vvi:100256800 263.462