Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0192 ATGAAGAGTATTTATGTCCAAAAGAGGTGCATTGTTGGACTCAAACATGTTCTGCTGAGAGGCCCAAAGAATGCTCGTGAAGCAGTAAAACACTTTGGTAAAGCTCCTGGTGTGCCACACAGCCACACTAAACCATATGTTCGATCAAAGGGAAGGAAGTTTGAGAGAGCCAGAGGAAGAAGAAACAGCAGGGGTTTTAGAGTTTAA 207 0.4348 MKSIYVQKRCIVGLKHVLLRGPKNAREAVKHFGKAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV* 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0192 68 Gene3D - 6 68 - -
Vvi5g0192 68 MobiDBLite consensus disorder prediction 45 68 - -
Vvi5g0192 68 MobiDBLite consensus disorder prediction 33 68 - -
Vvi5g0192 68 Pfam Ribosomal protein 60S L18 and 50S L18e 13 68 IPR021131 -
Vvi5g0192 68 PANTHER 60S RIBOSOMAL PROTEIN L18 12 68 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0192 Vvi-Chr5 1593994 1595174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0192 9 68 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 76.667 9.34e-29 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0192 K02883 - ming:122092109 89.3521