Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0183 ATGGAACACGGCCGTTCCGACCCCGAGGATTGGTCTGCAAACAATGCGGCCACGGGCTATGCATTGAGCGGCAAGATTATGCTGAGCGCGATTGTGATTTTGTTCGCTGTCGTAGTTCTCATGGTATGTCTCCACATCTACGCTCGGTGGTATCTGTACAGGACGCGCCGCCGCCATCATGCTCGTGCCCGGCGCCGGCATCATTTGGTTTTCTACGTGGACCCCACCAACCCAGCCGCCTCCGTCTCTTCTCCGACGCGCGGTCTCGACGCTTCTATTCTGAATTCGCTTCCGGTGTTCGTGTACTCCTCCAAGACCCACACGGATATGTCTGAATGTGCCGTGTGCCTATCTGAGTTTGAGGAGAACGAGAAGGGTCGTCGTCTTCCCAAGTGTAATCACTCTTTCCATATCGGCTGCATCGACATGTGGTTTCACTCTCACTCCACTTGCCCCCTCTGCCGATCTGCCGTCAACGCCGAAACCTCAGAGTCGGCAAGCCGGAATCCAACCGACGTCGTGATTTCGATGGCTGAAACAGAGGGCGGATCGACTTCCGCTTTGTGCTCCACATGCCAGCACGACGAAGATCGCACGGGTCGGCTGCGTACTTCCTCGTCGGTGGGGTCATCCTCAGTTGGGAGTCGAAGGAAGTCCAGTGAGCTTGCAGGCGTGTCAATTGAAGTTCCCAGGAGGAACGAGAATTTTGGACTATCAGAGGACGAGTCACTGCTGGACTCGCCGGCGACTCGGGTGCAAAAATCACCAGGAAGTCGTATACTTTCACTGAAGAGAATCCTTAGCAGGGACCGAAAATCGATGCTCTCTCCTACATCAGTCCCTGGTGTCAGTTGCGGGTCTGTGACTGAGTTCGAGGCCGACATCGAGCGAGGCACAGAAGACACTCAGCAGATTCAGACTCAGACTCAGCCTCAGCCTCGGGCTTCGAGGTGA 954 0.5577 MEHGRSDPEDWSANNAATGYALSGKIMLSAIVILFAVVVLMVCLHIYARWYLYRTRRRHHARARRRHHLVFYVDPTNPAASVSSPTRGLDASILNSLPVFVYSSKTHTDMSECAVCLSEFEENEKGRRLPKCNHSFHIGCIDMWFHSHSTCPLCRSAVNAETSESASRNPTDVVISMAETEGGSTSALCSTCQHDEDRTGRLRTSSSVGSSSVGSRRKSSELAGVSIEVPRRNENFGLSEDESLLDSPATRVQKSPGSRILSLKRILSRDRKSMLSPTSVPGVSCGSVTEFEADIERGTEDTQQIQTQTQPQPRASR* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0183 317 MobiDBLite consensus disorder prediction 293 317 - -
Vvi5g0183 317 CDD RING-H2_EL5-like 112 155 - -
Vvi5g0183 317 MobiDBLite consensus disorder prediction 300 317 - -
Vvi5g0183 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 170 - -
Vvi5g0183 317 FunFam RING-H2 finger protein ATL3 80 160 - -
Vvi5g0183 317 SUPERFAMILY RING/U-box 93 161 - -
Vvi5g0183 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 162 IPR013083 -
Vvi5g0183 317 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Vvi5g0183 317 SMART ring_2 113 154 IPR001841 -
Vvi5g0183 317 MobiDBLite consensus disorder prediction 198 226 - -
Vvi5g0183 317 MobiDBLite consensus disorder prediction 203 219 - -
Vvi5g0183 317 Pfam Ring finger domain 112 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0183 Vvi-Chr5 1538887 1539840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0183 8 303 Rapid Response to Elicitors AT3G16720 48.397 6.95e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0183 - - vvi:100253381 602.438