Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0181 ATGGGATACAACAATGCCGCAGACGCAGATTCACGAGGAAAGAAAAAAGTTGCCCTTATGGGGTTTTCTTCTATACTCTTGGTGGCAATGGTGGTGGGAACTGTTGTTACTGTGAATCACCGCAATGGGTCGTCCTCTTCGGCTACTGATGATGCTCAGGCAGGAGGCGGCATATCCACGTCCGTGAAAGCCATTCAGGCCATTTGCCAGCCCACTGATTACAAAGAAGCTTGTGTAAACAGCCTGACTTCAGCGAAGGCCAACACATCTGACCCCAAGGAACTGGTGAGGACAGCGTTCCAGGTGGCCATAAACCAGATTAGCTCCGCGCTTCAGAACTCTACTACATTGAGGGACTTGGAGAAGGATCCAAGAACCAAAGGGGCTCTTGAGAATTGCCATGAGCTCATGGACTACGCCATTGATGATCTCAGGAACTCCTTCAACAAGTTGGGGGTCTTTGATATCAGCAAAATCGATGATTATGTGGAGGATCTCAAAATCTGGCTGAGTGGGGCCCTCACCTACCAAGAAACCTGCCTGGATGGCTTCGAGAACACTACCGGCGATGCTGGAGAGAAGATGAAGGCTCTTCTCAAGAGCGCAGGAGAGCTCACCAGCAATGGCCTTGCTATGATTGATGAGATCTCGTCGGTGCTCACCAATTTGCAAATTCCGGGGATTAGCCGCAGGCTCCTGTCTGACGAATCAGGCAAAGGAGAGTATCGTTCAGACGAGGGAGGTCTCTATCCTTCATGGGCAAGCGTTGGGCAACGTAAACTCTTTCAGGCTACACCAGACACCATTAAACCCAATGTGATAGTGGCTCAAGATGGTTCCGGAAAATATAAGACCATCAATGAAGCCCTGGTTGAAATTCCCAAGAATGGCAACACCACATTTGTGCTGTATGTCAAAGAGGGTGTGTATAAGGAGCAGGTGAACTTCACAAAGAGCATGACCAACGTTATGCTAATTGGTGACGGCCCTACCAAAACTACTATCTCTGGAAGCTTGAATTTCATAGATGGAATCGGCACATTCAGGACAGCAACAGTTGCTGCGGTTGGGAGTAATTTCATGGCCAAGGACATAGGATTTGAGAACAATGCAGGAGCTTCCAAGCACCAAGCTGTGGCACTGCGGGTGGGATCCGACATGGCCATCTTTTACAACTGCCGGATGGACGGATACCAAGACACCCTCTACGTACACGCCCACCGTCAATTCTACCGGGACTGCACCATCACGGGGACCATCGACTTCATTTTTGGAGACTCGGCGGTGGTCTTCCAGAACTGCTTGATACTGGTGAGGAAGCCGCTAGACAACCAGCAATGCATCGTGACAGCTCAGGGAAGAAATGAGAGGCGTGAGCCCACTGGAATTGTCCTCCAGAACTGCACCATCTCCGCTGCTGATGACTACATTCCTTTCAAAACCAAGTTCAAATCTTACCTCGGGAGGCCCTGGAAGGCCTTCTCAAGAACCATAATCATGCAGTCACAGATCGATGATTTGATCAGCCCAGAGGGGTGGCTGCCATGGATGGGTGACTTTGGACTCAACACTTGCTTCTACGCAGAGTATGGAAACAGGGGTCCTGCCTCAGCCACCACTAGCAGGGTTACATGGCGAGGCATCAAGCAGATTACTGGTCAACATGTCAACGATTTCACGGTCGGAAGGTTCATTTCCGGCCATCTGTGGCTTGGGGCCTCTGGGGTGCCCTACACTTCTGACATGATGGCTGTGTAG 1758 0.5051 MGYNNAADADSRGKKKVALMGFSSILLVAMVVGTVVTVNHRNGSSSSATDDAQAGGGISTSVKAIQAICQPTDYKEACVNSLTSAKANTSDPKELVRTAFQVAINQISSALQNSTTLRDLEKDPRTKGALENCHELMDYAIDDLRNSFNKLGVFDISKIDDYVEDLKIWLSGALTYQETCLDGFENTTGDAGEKMKALLKSAGELTSNGLAMIDEISSVLTNLQIPGISRRLLSDESGKGEYRSDEGGLYPSWASVGQRKLFQATPDTIKPNVIVAQDGSGKYKTINEALVEIPKNGNTTFVLYVKEGVYKEQVNFTKSMTNVMLIGDGPTKTTISGSLNFIDGIGTFRTATVAAVGSNFMAKDIGFENNAGASKHQAVALRVGSDMAIFYNCRMDGYQDTLYVHAHRQFYRDCTITGTIDFIFGDSAVVFQNCLILVRKPLDNQQCIVTAQGRNERREPTGIVLQNCTISAADDYIPFKTKFKSYLGRPWKAFSRTIIMQSQIDDLISPEGWLPWMGDFGLNTCFYAEYGNRGPASATTSRVTWRGIKQITGQHVNDFTVGRFISGHLWLGASGVPYTSDMMAV* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0181 585 PANTHER PECTINESTERASE 26 572 - -
Vvi5g0181 585 Pfam Plant invertase/pectin methylesterase inhibitor 64 212 IPR006501 GO:0004857
Vvi5g0181 585 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Vvi5g0181 585 NCBIfam pectinesterase inhibitor domain 61 215 IPR006501 GO:0004857
Vvi5g0181 585 FunFam Pectinesterase 61 217 - -
Vvi5g0181 585 CDD PMEI-like_3 67 218 - -
Vvi5g0181 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 217 IPR035513 -
Vvi5g0181 585 Gene3D - 266 582 IPR012334 -
Vvi5g0181 585 FunFam Pectinesterase 266 582 - -
Vvi5g0181 585 SUPERFAMILY Pectin lyase-like 269 580 IPR011050 -
Vvi5g0181 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 217 IPR035513 -
Vvi5g0181 585 SMART PMEI_2 60 212 IPR006501 GO:0004857
Vvi5g0181 585 Pfam Pectinesterase 272 567 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0181 Vvi-Chr5 1527457 1529324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0181 8 584 Carbohydrate Esterase AT3G05610 52.577 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0181 K01051 - vvi:100852528 1160.21