Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0172 ATGTGTGGAGGTGCAATTATATCCGGCTTCATCGCCGCAAAGCGTGGCCGGAAACTCACCAAGGAGGACCTCTGGTCGGAGCTCGATACCATCTCGGACCTCCTCGGTTTGGATTCTGCTAACGGCGGTGATGATTTCAACCCGTCTGAAAATAGGGTTGCTCCAAAGCCAAAGCAAGTGAGCAAAGGGACGAACGAGAATACCCAGAAAGCGATTCGGGTGGAGGAAAAGAAGAGTACCACCACTCCGAGGATTCGGAAGAACGTGTACAGAGGAATCCGGCAGCGGCCTTGGGGAAAATGGGCGGCGGAGATTCGGGACCCGCACAAGGGTGTGAGAGTGTGGCTCGGCACCTACAACACCGCCGAGGAAGCCGCCAGAGCCTACGACGAAGCCGCCAAGAGAATCAGAGGCGACAAGGCCAAGCTCAACTTCGCTGATCCCTCCTCTCCCCACTTCCCTCCGCCCATCCCACTGCCGCCATCCAAAAGACGATGCGTTGTTCCAGACCCCACAGCACAGTCAAGTTATCAGCCGACCGTACCACCACCACCATTAATGACCTATCCTGCTCCGTACGAGAACGAAGCAGCGAGCGAGTTGGAGTTTAAGGAGCAAATCTCGAGCTTGGAATCGCTCCTGGGTTTGGAGCCGGAACAGGCCGCCACTCAGTTGAACGAAATCACCGAGTCAGACTCGGTCGACCTCTGGATGCTGGAGGACCTTGCTTCCACTCACCCTCACCACCATCGTCAGCATGTATGCAGCGCTGCGTTTTGA 780 0.5641 MCGGAIISGFIAAKRGRKLTKEDLWSELDTISDLLGLDSANGGDDFNPSENRVAPKPKQVSKGTNENTQKAIRVEEKKSTTTPRIRKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTYNTAEEAARAYDEAAKRIRGDKAKLNFADPSSPHFPPPIPLPPSKRRCVVPDPTAQSSYQPTVPPPPLMTYPAPYENEAASELEFKEQISSLESLLGLEPEQAATQLNEITESDSVDLWMLEDLASTHPHHHRQHVCSAAF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0172 259 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Vvi5g0172 259 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Vvi5g0172 259 PANTHER DNA-BINDING DOMAIN 66 200 IPR044808 GO:0003700|GO:0009873
Vvi5g0172 259 FunFam Ethylene-responsive transcription factor 2 88 147 - -
Vvi5g0172 259 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Vvi5g0172 259 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Vvi5g0172 259 MobiDBLite consensus disorder prediction 42 68 - -
Vvi5g0172 259 SUPERFAMILY DNA-binding domain 89 146 IPR016177 GO:0003677
Vvi5g0172 259 CDD AP2 90 147 IPR001471 GO:0003700|GO:0006355
Vvi5g0172 259 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Vvi5g0172 259 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0172 Vvi-Chr5 1463437 1464309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0172 1 246 AP2-EREBP Transcription Factor Family AT3G16770 44.906 7.62e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi5g0172 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0172 K09286 - vvi:100249982 486.878