Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0170 ATGGTATCGCTGAAGCTTCAGAAGCGGCTCGCCGCCAGCGTTCTCAAGTGCGGGAGAGGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAAAATGTAAGGAAACTTGTGAAAGATGGTTTTATCATCAGGAAGCCAACTAAGATCCACTCTCGATCTCGGGCACGGAGAATGAAGGAGGCCAAGAGAAAGGGACGTCACTCTGGATATGGTAAACGCAAGGGTACAAGGGAGGCAAGGTTGCCCACTAAGATCCTTTGGATGAGGAGAATGCGTGTACTGAGGCGCTTGCTCCGCAAGTATCGGGAGTCCAAAAAAATTGACAAGCACATGTACCATGACATGTACATGAAAGTGAAAGGTAATGTCTTTAAGAATAAGAGGGTGCTAATGGAGAGTATCCACAAGTCGAAGGCTGAAAAGGCAAGAGAAAAAACTCTTTCTGACCAGTTTGAGGCTAAGCGTGCTAAGAACAAGGCAAGCAGAGAAAGGAAGCTAGCTCGGAGGGAGGAGCGCCTGGCCCAGGGACCTGTGGAAAGGGCACCACCAGCATCTGCACCCCAGCCTGCTGAGGGAACTAAAAAGGCCAAGAAGTGA 621 0.5024 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPVERAPPASAPQPAEGTKKAKK* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0170 206 MobiDBLite consensus disorder prediction 144 206 - -
Vvi5g0170 206 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vvi5g0170 206 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Vvi5g0170 206 FunFam Ribosomal protein L19 57 191 - -
Vvi5g0170 206 PANTHER 60S RIBOSOMAL PROTEIN L19 1 187 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vvi5g0170 206 MobiDBLite consensus disorder prediction 57 85 - -
Vvi5g0170 206 MobiDBLite consensus disorder prediction 144 184 - -
Vvi5g0170 206 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Vvi5g0170 206 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vvi5g0170 206 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vvi5g0170 206 FunFam Ribosomal protein L19 1 56 - -
Vvi5g0170 206 Gene3D - 57 188 - -
Vvi5g0170 206 Coils Coil 161 181 - -
Vvi5g0170 206 MobiDBLite consensus disorder prediction 57 79 - -
Vvi5g0170 206 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vvi5g0170 206 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0170 Vvi-Chr5 1454742 1457852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0170 1 206 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 86.058 1.90e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0170 K02885 - vvi:100267158 389.037