Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0169 ATGGCGTCGGAGGACTTGATGTCCGGCGCTGGGGCACGCTACATTCAAATGCAATCGGAGCCGATGCCGTCGACGATATCGTCGTTCTTCAGCTTCCGCCAGAGCCCGGAGTCAACTCGGATTTTCGACGAGTTGCCCAAGGCCACAATCGTGTTCGTCTCTCGGCCCGATGCCAGCGACATCAGCCCCGCGCTGTTAACTTACACCATTGAATTCCGATATAAACAGTTCAAGTGGCGGTTAATAAAGAAAGCTTCACAAGTATTCTTTTTACACTTTGCGTTAAAAAAACGAGTAATTATCGAGGAAATTCAAGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAACATAGGAATAGGAGAGCACACAGCAGTCGTGCATGATGATGATGAACCTGATGAGGAAACTGTTCCTTTACATCATGATGAAAGTGTTAAAAACAGAGATATTCCATCTAGTGCTGCTCTGCCAATCATTCGGCCAGCCCTGGGAAGGCAGAATTCTGTTTCTGATAGAGCAAAGGTTGCAATGCAAGGGTATCTTAATCTATTTCTTGGAAATTTGGATATAGTAAACTCCCGAGAGGTTTGCAAATTTTTGGAGGTTTCGAAGTTATCATTTTCTCCGGAATATGGCCCAAAGCTGAAAGAAGATTATGTGATGGTCAAGCATTTACCAAAAATTCCAAAGGAAGACGATACTAGAAAATGTTGCCCATGTCCTTGGTTCAGTTGTTGCAATGACAATTGGCAAAAGGTGTGGGCTGTATTGAAACCTGGATTCTTGGCCTTGCTGGAAGATCCTTTTCATCCTCAGCCTTTAGATATTATTGTTTTTGATCTGCTACCTGCCTCAGATGGAAATGGGGAGGGCCGGCTATCATTAGCAAAAGAAATAAAGGAAAGGAACCCTTTACGCCATGCATTAAAGGTGACATGCGGAAACCGGAGCATAAGGTTAAGAGCTAAGAGTAGTGCTAAAGTTAAAGACTGGGTTGCTGCAATTAATGATGCTGGACTTAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGCTTTGGCTCTTTTGCACCTCCAAGGGGTTTGAGTGAAGATGGTAGTCTAGCTCAATGGTTTGTCGATGGTCGAGCGGCATTTGAAGCGATTGCCTCCGCAATTGAGGAAGCAAAATCAGAGATATTTATTTGTGGCTGGTGGGTGTGCCCAGAACTGTATCTGAGGCGTCCATTTCACTCTCATGCTTCTTCTCGGCTTGATGCTTTACTGGAAGCAAAAGCTAAGCAAGGTGTTCAGATTTACATTCTTCTCTACAAAGAGGTTGCTCTTGCTTTGAAAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTAGGTGATCACCCTCCTTTGATGTGGCCAGGAAAAGACTATTACAACCCAAGGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTGAAAAGAAGAATGTTGAAAACAACTATAAAGACATTAAAAAACTGGATTCCTTTTCCTCTCGGTCATCTTTCCAAGATATCCCACTGCTTTTGCCTCAAGAGCCTGATGGATTGGATTCTCCCCATGGAGAATCAAAATTGAATGGGTTTGACTCCTCTAGTAATCTCCTTGATCAGCCAACTAGGGTCAGCAGAAGTCTTTCTTTCTCTTTTCGCAAGTCCAAAATTGAACCAGTCCCAGATATGCCAATGAAAGGTTTTGTAGATGACCTTGATACCTTGGATCTGAAAGGAAAAATGTCTTCAGATATAATGGCACAGCCTGGAATGAGAACGTGTGATAGAGAGTGGTGGGAAACACAAGAGCGGGGGAATCAAGTTCTTTCTGCTGATGAAACTGGACAAGTTGGTCCTTGCGTTCCATGTCGTTGTCAGGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTATATATATTGAGAATCAATTTTTCATATCAGGTCTTTCAGGTGATGAGATAATACGCAATCGAGTATTAGAAGTGTTATACAGGCGTATTATGCAAGCATACAATGATAAGAAGTGTTTCAGAGTTATTATTGTCATACCACTCCTACCTGGCTTCCAGGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTTATGATGTTATTGGTCATAAAACACATGATTACATTTCTTTCTATGGTCTCAGAGCTTATGGTAGACTTTTTGATGGAGGTCCTGTGGCCTCTAGTCAGGTGTATGTGCATAGCAAAATCATGATAGTTGATGACTGCACAACCTTGATTGGATCCGCTAACATTAATGATAGGAGTTTGCTTGGATCAAGAGATTCTGAGATTGGCGTGCTCATTGAAGACAAGGAATTGGTTGATTCATATATGGGAGGAAAACCAAAGAAGGCTGGCAAATTTGCTCATAGTCTCCGCCTCTCACTGTGGTCAGAACACCTTGGTCTTCGAGGAGGAGAGATTGATCAAATAAAAGATCCAGTTGTTGATTCAACTTACAGAGATGTGTGGATGGCAACTGCAAAGACGAATTCCACAATCTACCAAGATGTCTTTTCTTGCATCCCAAACGATCTCATACATTCTAGAGCTGCAATGAGACAACATATGGCCATCTGGAAGGAGAAACTTGGCCACACCACCATTGATTTAGGAATAGCCCCTATGAAGCTAGAATCCTATGACAATGGAGACATGAAGACAATCGAACCCATGGAAAGATTAGAGTCGGTGAAGGGTCATCTTGTTTATTTCCCCTTAGATTTCATGTGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGCGAGTACTATGCCTCTCCTCAAGTCTTTCACTGA 3342 0.4288 MASEDLMSGAGARYIQMQSEPMPSTISSFFSFRQSPESTRIFDELPKATIVFVSRPDASDISPALLTYTIEFRYKQFKWRLIKKASQVFFLHFALKKRVIIEEIQEKQEQVKEWLQNIGIGEHTAVVHDDDEPDEETVPLHHDESVKNRDIPSSAALPIIRPALGRQNSVSDRAKVAMQGYLNLFLGNLDIVNSREVCKFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDTRKCCPCPWFSCCNDNWQKVWAVLKPGFLALLEDPFHPQPLDIIVFDLLPASDGNGEGRLSLAKEIKERNPLRHALKVTCGNRSIRLRAKSSAKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLSEDGSLAQWFVDGRAAFEAIASAIEEAKSEIFICGWWVCPELYLRRPFHSHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTLEHKVGDHPPLMWPGKDYYNPRESEPNSWEDTMKDELDRGKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPQQHMVIPHYMGRSREMEVEKKNVENNYKDIKKLDSFSSRSSFQDIPLLLPQEPDGLDSPHGESKLNGFDSSSNLLDQPTRVSRSLSFSFRKSKIEPVPDMPMKGFVDDLDTLDLKGKMSSDIMAQPGMRTCDREWWETQERGNQVLSADETGQVGPCVPCRCQVIRSVSQWSAGTSQVEDSTHNAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLEVLYRRIMQAYNDKKCFRVIIVIPLLPGFQGGLDDGGAASVRAIMHWQYRTICRGNNSILQNLYDVIGHKTHDYISFYGLRAYGRLFDGGPVASSQVYVHSKIMIVDDCTTLIGSANINDRSLLGSRDSEIGVLIEDKELVDSYMGGKPKKAGKFAHSLRLSLWSEHLGLRGGEIDQIKDPVVDSTYRDVWMATAKTNSTIYQDVFSCIPNDLIHSRAAMRQHMAIWKEKLGHTTIDLGIAPMKLESYDNGDMKTIEPMERLESVKGHLVYFPLDFMCKEDLRPVFNESEYYASPQVFH* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0169 1113 Coils Coil 97 117 - -
Vvi5g0169 1113 Gene3D Endonuclease Chain A 364 603 - -
Vvi5g0169 1113 Coils Coil 608 628 - -
Vvi5g0169 1113 PANTHER PHOSPHOLIPASE D 169 1102 IPR015679 -
Vvi5g0169 1113 ProSiteProfiles PH domain profile. 250 341 IPR001849 -
Vvi5g0169 1113 CDD PH_PLD 192 339 - -
Vvi5g0169 1113 SUPERFAMILY PH domain-like 247 339 - -
Vvi5g0169 1113 CDD PLDc_vPLD1_2_yPLD_like_2 769 953 - -
Vvi5g0169 1113 Pfam PLD-like domain 782 958 IPR025202 -
Vvi5g0169 1113 SMART PH_update 215 343 IPR001849 -
Vvi5g0169 1113 CDD PLDc_vPLD1_2_yPLD_like_1 369 514 - -
Vvi5g0169 1113 SMART pld_4 476 503 IPR001736 GO:0003824
Vvi5g0169 1113 SMART pld_4 909 936 IPR001736 GO:0003824
Vvi5g0169 1113 PIRSF PLD_euk 600 1113 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vvi5g0169 1113 PIRSF PLD_euk 49 616 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vvi5g0169 1113 Gene3D Endonuclease Chain A 734 971 - -
Vvi5g0169 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 476 503 IPR001736 GO:0003824
Vvi5g0169 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 909 936 IPR001736 GO:0003824
Vvi5g0169 1113 SUPERFAMILY Phospholipase D/nuclease 748 959 - -
Vvi5g0169 1113 Gene3D - 245 341 IPR011993 -
Vvi5g0169 1113 FunFam Phospholipase 743 963 - -
Vvi5g0169 1113 Pfam Phospholipase D Active site motif 476 503 IPR001736 GO:0003824
Vvi5g0169 1113 SUPERFAMILY Phospholipase D/nuclease 328 596 - -
Vvi5g0169 1113 MobiDBLite consensus disorder prediction 646 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0169 Vvi-Chr5 1434795 1452481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0169 1 989 Phospholipase D Gene Family (Wang group) AT3G16785 75.075 0.0 1441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0169 K01115 - vvi:100261987 2259.95