Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0168 ATGGAGAATCTTTTGGCTCTTTTTGACGCATTGATGCGGAATATATCACTCATGAAAGGGGAGAGCTGGAGGAGTGATGTTGGAAGAGAAGCTGCTGAATCGTTAGCAAAGGAAGCAAGGGGGAACAATTTGATGTTGACTTCTCCAGGCATTATAAATTCAAGGGGCTCTAGTAATTTTGCCTCTGTCTTCTCCAAGAAAGGAAAGAAAGGAGTGAATCAAGATTGCTTCATTGTGTGGGAGGAGTTTGGATGCCAAGAAGACATGACCTTTTGTGGGATTTTTGATGGGCATGGCTTGTGGGGGCACCATGTAGCCAAAAGGGTCAGGAAATTGATGCCATCATTTTTGTTATGCCATTGGCAAGAAACTCTTGCACTTGCTCAGGGTTTTGACATGATGGGACTTGATAGAAACCTTTGCCCATTTGATATATGGAGGCAATCCTACTTGAAAACTTGTGCTGCCATTGATGAGGAGCTCGAGCAGCATGCAGATCTTGATTCTTTTCGCAGTGGCACCACAGCTTTGACAATTGTTCGACAGGGAGAACTCATTATCATAGCAAATGTTGGTGATTCTCGGGCTGTGTTGGGAACCACGTCTGATGATGGCAGCCTGGTAGCAGTTCAACTTACTGTCGACTTTAAGCCCAATTTACCTCAGGAAGCTGAGCGAATAACTAAGTCCAGAGGGCAGGTATATTGCTTACAAGATGAACCAGGGGTGTACAGGGTTTGGATGCCAAATACAAAGACGCCAGGGCTAGCAATATCAAGAGCCTTTGGTGACTACTGCATGAAGGACTTTGGGGTTATTTCCGTGCCTGAAGTCACACAAAGAAATATAACCAGCAGAGACCAATTTGCCATTTTAGCCACAGATGGGGTATGGGATGTCATCTCTAACCAAGAGGCAGTTGAGATTGTTTCTTCAGCACCAGACCGAAACAAATCTGCTAAAAGGCTGGTGGAATGTGCAGTTGATGCATGGAAACGAAAGAAACGGGGTGTTGCAACGGATGACATCACAGCTATTTGCCTCTTCTTCCACCCTTCACCCTCCCAGCAAGGCAACAATGCTAAGGTCCTAGAAGAGGCTGGCATGACAAAAGCTGGGTAA 1122 0.4554 MENLLALFDALMRNISLMKGESWRSDVGREAAESLAKEARGNNLMLTSPGIINSRGSSNFASVFSKKGKKGVNQDCFIVWEEFGCQEDMTFCGIFDGHGLWGHHVAKRVRKLMPSFLLCHWQETLALAQGFDMMGLDRNLCPFDIWRQSYLKTCAAIDEELEQHADLDSFRSGTTALTIVRQGELIIIANVGDSRAVLGTTSDDGSLVAVQLTVDFKPNLPQEAERITKSRGQVYCLQDEPGVYRVWMPNTKTPGLAISRAFGDYCMKDFGVISVPEVTQRNITSRDQFAILATDGVWDVISNQEAVEIVSSAPDRNKSAKRLVECAVDAWKRKKRGVATDDITAICLFFHPSPSQQGNNAKVLEEAGMTKAG* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0168 373 PANTHER PROTEIN PHOSPHATASE 58 348 IPR015655 GO:0004722|GO:0006470
Vvi5g0168 373 Gene3D - 52 352 IPR036457 -
Vvi5g0168 373 ProSiteProfiles PPM-type phosphatase domain profile. 60 350 IPR001932 -
Vvi5g0168 373 CDD PP2Cc 59 350 IPR001932 -
Vvi5g0168 373 Pfam Protein phosphatase 2C 84 326 IPR001932 -
Vvi5g0168 373 SMART PP2C_4 53 348 IPR001932 -
Vvi5g0168 373 FunFam Probable protein phosphatase 2C 34 51 352 - -
Vvi5g0168 373 SUPERFAMILY PP2C-like 51 352 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0168 Vvi-Chr5 1430510 1432718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0168 1 351 PP2C-type Phosphatase Gene Family AT3G05640 63.173 9.80e-167 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0168 - - vvi:100256894 757.288