Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0136 ATGAATCTGGGTAGCGGACAGGGATCCATGTCGACGGCGAGTTCTAGTGGTGCATGGAAGGCCGGAGATGTGGTCCCCGACCAGTTTCCGGCGGGTCTCCGGGTCCTGGTGGTTGATGATGATCCCACTTGTCTCATGATCTTGGAGAAGATGCTCCGGACTTGCCTTTATGAAGTTACTAAATGCAATCGAGCAGAAACAGCATTATCCCTGTTGCGAGGGAATAAAAGCGGGTTTGATATTGTTATAAGCGATGTACACATGCCCGACATGGACGGATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCATGATGTCTGCTGATGACGGAAAACATGTTGTGATGAAGGGTGTCACTCATGGTGCATGTGATTATTTGATTAAGCCTGTTCGAATTGAGGCGCTGAAGAACATATGGCAGCATGTGGTTAGGAAGAGGAAGAACGAGTGGAAGGATTTGGAGCAGTCCGGAAGTGTGGAAGATGGAGATCGCCAGCAAAAACCATCAGAAGACGTGGATTATTCGTCTTCAGCAAATGAAGGGAATTGGAAAAACTCGAAGAGGAGGAAAGATGAGGAAGATGATGCGGAGGAGAGGGATGATACTTCCACCCTGAAGAAGCCGCGGGTTGTCTGGTCGGTAGAGCTCCACCAACAGTTTGTGGCTGCTGTTAATCAACTGGGCATTGACAAGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGTTTGTATCTTAGGAGGCTAAGTGGTGTATCACAGCACCAGAATGGGCTCAATAACTCTTTCATGGGTCCCCAAGAAGCAACTTTTGGATCAATATCTTCACTTAATGGGCTTGATCTTCAGACTCTTGCTGTTGCGGGTCAACTCCCAGCACAAAGCCTCGCCACACTCCAAGCAGCAGGGCTTGGTAGGTCAACTGGTAAATCGGGACTACCTATGCCGCTTGTTGATCAAAGGAACCTCTTTAGTTTTGAAGCCCCTAAGTTCAGATATGGGGAAGGTCAGCAGCAACAGCAACAACTGAGCAATAGTAGTAAACAAATGAACTTACTACATGGAATCCCGACAACCATGGAGCCAAAGCAGCTTGCTACTTTGCGCCATTCTGCACAGTCATTTGGGAGCATAAATATGCAAGTCAATGCCCATGGAAATGACAGTAGCTCTTTACTGATGCAGATGGCCCAACCACATTCAAGGGCGCAAATACTTAATGAAACTACTGGTAATCATGTTTCCCGGATCGCATCATCCATGGGGCAGCCTGTTTTATCAAATGGCATTGCTGGTGGGCTTCTAACAAGAAATGTTATTGTTGAAAATGGCAGAGGGGCTGGATTCAATCCAGTTTCCCAGGGCCCTTCAGTGGTAGAGTTCCCAATGAACCACACTGCAGAATTGCCAGGTAACAGTTTCCCTCTTGGGACCAATCCTGGGATATCCAGTATCCAATCCAAAGGGCTGTTGGAAGAGGTTAGCTCAGAAATAAAAGGATCAAGAGGATTTGTTCCAAGTTATGATATTTTTAATGAGTTGCATCAGCCCAAATCTCAAGATTGGGAATTACAAAATGTAGGCTTGACGTTTAATGCCTCTCAACATGCAAACTCTATACCAGGAAACCTGGGTGTCTCGCAATCGGTGTTGGTCCACCAAGTCTTTTCCTCTGGCCAAAAGAGTGGACAAAACATGAATACGCCTGTTGTTAGCAAGGCTATGTTCTCTGTGGGGGCAGGAAGTGAGCATGGGAACACACACAACATCAGTCAACACCTCAACACGCTTGTTGACAGTTCATCAAGGGTCAAGACTGAAAAAATTCTTGATCCATGCTGTGAAATCACCCCCTTCCCTGAACACTATGTTCAGGAGGATCTCATGAGTGCACTTCTCAAACAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCCATGGATAACATTCCCGTGTAA 2040 0.4637 MNLGSGQGSMSTASSSGAWKAGDVVPDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRGNKSGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEDGDRQQKPSEDVDYSSSANEGNWKNSKRRKDEEDDAEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNGLNNSFMGPQEATFGSISSLNGLDLQTLAVAGQLPAQSLATLQAAGLGRSTGKSGLPMPLVDQRNLFSFEAPKFRYGEGQQQQQQLSNSSKQMNLLHGIPTTMEPKQLATLRHSAQSFGSINMQVNAHGNDSSSLLMQMAQPHSRAQILNETTGNHVSRIASSMGQPVLSNGIAGGLLTRNVIVENGRGAGFNPVSQGPSVVEFPMNHTAELPGNSFPLGTNPGISSIQSKGLLEEVSSEIKGSRGFVPSYDIFNELHQPKSQDWELQNVGLTFNASQHANSIPGNLGVSQSVLVHQVFSSGQKSGQNMNTPVVSKAMFSVGAGSEHGNTHNISQHLNTLVDSSSRVKTEKILDPCCEITPFPEHYVQEDLMSALLKQEGIGPVEGEFDFDGYSMDNIPV* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0136 679 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Vvi5g0136 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Vvi5g0136 679 SMART REC_2 33 145 IPR001789 GO:0000160
Vvi5g0136 679 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Vvi5g0136 679 FunFam Two-component response regulator 33 170 - -
Vvi5g0136 679 MobiDBLite consensus disorder prediction 157 176 - -
Vvi5g0136 679 CDD REC_typeB_ARR-like 35 149 - -
Vvi5g0136 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Vvi5g0136 679 Gene3D - 33 167 - -
Vvi5g0136 679 Gene3D - 210 272 - -
Vvi5g0136 679 PIRSF RR_ARR_type-B 10 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi5g0136 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 367 IPR045279 GO:0009736
Vvi5g0136 679 MobiDBLite consensus disorder prediction 189 209 - -
Vvi5g0136 679 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vvi5g0136 679 MobiDBLite consensus disorder prediction 157 209 - -
Vvi5g0136 679 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Vvi5g0136 679 FunFam Two-component response regulator 209 272 - -
Vvi5g0136 679 SUPERFAMILY CheY-like 32 156 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0136 Vvi-Chr5 1184602 1188028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0136 68 679 Response Regulator Gene Family AT3G16857 52.607 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi5g0136 Response_reg 3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0136 - K14491 vvi:100263661 1310.43