Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0135 ATGGCTTTCAGCTTGATTAGGCTGTTGGTCTTGGATCTCATCGTGGCCGCCCTTATTCCGATCGCTCTGTGTCAGTCTGAGGCGCCGTCGCCGACGGCTGATTCCTGCAACGGCATCTTCTTGTCGTACGCGTACACCAGCGGAGCCAAAATCCCGCCGAATCTGAACTCGGATCCGACTGAGCAGCCCTACAGATTCGAGTCCACGCTCACTGTGCTCAACAATGGGCTCGAGGAGCTCAAGTCTTGGAGGGTCTTTGTGGGCTTTCAACATAAGGAGTATTTGGTGTCGGCTTCGGGGGCTGTGCTCGCCAACGGTACTAGTCTTCCAGCCACTGTTGGAGGCGGCGTCGTTTTTGCTGGTTACCCTTCGACGGATCTCAAGACGGCGATTGAGACCGCCGGCGACACGACCCAGATGCAGATTCAGGTCCAGTTTGTGGGGACGCAGTTCGGAGTGGGGTCGCCGAATGTGCCGATGCCGACGAATGTGTCGCTCGTTAACGATGGGTTTGTTTGCCCTAAACCCACTATGCAAGGGACAAGTGAGATGCAAGTTTGTTGCACAAAAGATTCAAACTACAAGTCAAACGTCTCCTCAGATGATGAGTTCCTGCCCCGCCAAAACGGAGATCTTACAATAATGTATGATGTGACCAGAACATATGAAAGCAGTTACTGGGCCCAGATTACAATCTCAAACCATAACCCTCTTGGTCGTCTCGATGATTGGAAGTTAAGCTGGGACTGGATGAAGGGTGAATTTATCAATAGCATGAAAGGGGCATATCCAGATATTGTTGATACGACTGACTGTATATTTGGTGAACAAGGCCAGTACTACCAGGATCTTGACTTCTCCAATGTATTGAATTGTGAAAGAAGGCCAACCATAATCGACCTGCCTCCAACAAAGGCCAATGACACTACACTCGGGTTGATCCCTTTCTGTTGCCGGAATGGTACAATCCTGCCACCAACAATGGACCCGAGTAAGTCAACTTCAGTATTCCAGATGAATGTCTACAAAATGCCCCCAGATCTCAACCGGTCGGAGCTGACCCCACCACAGAACTGGAATATCAGTGGGACACTCAACCCTGATTATCAATGCGGTTCTCCAGTGCGTGTGAGCCCAAGCGAGTTCCCTGATACTAGTGGCTTGCCATCAAATTCAACTGCCGTCGCCAGTTGGCAAGTGGTTTGCAACATCACACAGCCCAAGGGAGCAAGCCCCAAATGCTGTGTATCATTTTCTGCATACTATAATGAATCTGTCGTTCCCTGCAAAACCTGTGCATGTGGCTGCCCTAGCACCCCGAGCCAAACTTGTAGTACTACTGCTGCTGCTATTCTTCTTCCATCAGAGGCTCTTCTTGTTCCATTTGAGAATCGGACTGCTCTGACCAAAGCTTGGGCTGAACTTAAACACCTGACAATTCCAAATCCAATGCCCTGTGGCGATAATTGTGGTGTCAGCATCAACTGGCATTTATATACAGACTACAGCCGGGGATGGACTGCAAGGATTACGATCTTCAACTGGGGTGAAACTAGTTATGTTGATTGGTTTGCGGCAGTTGAAATGGACAAAGCAGCCCCTGGTTTTGAAAAAATGTACTCATTCAATGCAACTGCATTGGATGGTGTTAACAATACCATATTCATGCAGGGTATCGAAGGCTTGAACTATCTTGTGGCAGAAACAGACGCAGCCAACCCAAAGAAGGATCCTAGGGTGCCTGGGAAACAACAGTCAGTGATCTCGTTTACAAAGAAACCCACGCCTGGAATCAATGTGGCTGGTGGGGCTGGGTTCCCCAGTAAAGTATTCTTCAATGGGGAGGAATGCTCACTTCCATCCGTCCTTCCAACAAGCAGTAGTTACAAGAAGAGCCCAGCTATGACCATTTCAGTCCTCCTATTGATTGTAGTTCTTATGTTGATGCAGCAATAG 1956 0.4903 MAFSLIRLLVLDLIVAALIPIALCQSEAPSPTADSCNGIFLSYAYTSGAKIPPNLNSDPTEQPYRFESTLTVLNNGLEELKSWRVFVGFQHKEYLVSASGAVLANGTSLPATVGGGVVFAGYPSTDLKTAIETAGDTTQMQIQVQFVGTQFGVGSPNVPMPTNVSLVNDGFVCPKPTMQGTSEMQVCCTKDSNYKSNVSSDDEFLPRQNGDLTIMYDVTRTYESSYWAQITISNHNPLGRLDDWKLSWDWMKGEFINSMKGAYPDIVDTTDCIFGEQGQYYQDLDFSNVLNCERRPTIIDLPPTKANDTTLGLIPFCCRNGTILPPTMDPSKSTSVFQMNVYKMPPDLNRSELTPPQNWNISGTLNPDYQCGSPVRVSPSEFPDTSGLPSNSTAVASWQVVCNITQPKGASPKCCVSFSAYYNESVVPCKTCACGCPSTPSQTCSTTAAAILLPSEALLVPFENRTALTKAWAELKHLTIPNPMPCGDNCGVSINWHLYTDYSRGWTARITIFNWGETSYVDWFAAVEMDKAAPGFEKMYSFNATALDGVNNTIFMQGIEGLNYLVAETDAANPKKDPRVPGKQQSVISFTKKPTPGINVAGGAGFPSKVFFNGEECSLPSVLPTSSSYKKSPAMTISVLLLIVVLMLMQQ* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0135 651 Pfam COBRA-like protein 226 405 IPR006918 GO:0010215|GO:0016020
Vvi5g0135 651 PANTHER COBRA-LIKE PROTEIN 7 14 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0135 Vvi-Chr5 1178977 1182293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0135 36 631 COBRA Gene Family AT4G16120 70.618 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0135 - - vvi:100258513 1295.03