Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0133 ATGGTGGATCTGAGTGAGAAAGGGTCAGAGTCGGAAGACATGAACAACAAAAACCCAGATGCTGTTTCGTCGGCTGAGAGCCAGGTTAACGAGCCGAAGAAGACCTGCGCTGATTGTGGCACCACCAAAACCCCTCTCTGGAGAGGCGGTCCAGCTGGGCCTAAGTCTCTGTGCAATGCATGTGGTATCAGAAGCAGGAAGAAGAGAAGAGCCTTCCTGGGGTTGAACAAAGGATCAACAGATGATAGAAAAGCAAAGAGAAGCAGCAACCACTCCCATAACAATGGTGGCGGCAACGGGAACAATAAATTGGGGGACTCGCTGAAGAGGAGGCTCTTCGCATTGGGAAGAGAGGTGTTGTTGCAGAGATCAACAGTGGAGAAACAGAGGAGGAAGCTGGGAGAAGAAGAGCAAGCGGCCGTACTGTTAATGGCTCTGTCTTACGGCTACGTCTATGCTTAA 462 0.5087 MVDLSEKGSESEDMNNKNPDAVSSAESQVNEPKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAFLGLNKGSTDDRKAKRSSNHSHNNGGGNGNNKLGDSLKRRLFALGREVLLQRSTVEKQRRKLGEEEQAAVLLMALSYGYVYA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0133 153 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 32 70 - -
Vvi5g0133 153 ProSitePatterns GATA-type zinc finger domain. 36 61 IPR000679 GO:0006355|GO:0043565
Vvi5g0133 153 CDD ZnF_GATA 35 87 IPR000679 GO:0006355|GO:0043565
Vvi5g0133 153 SMART GATA_3 30 80 IPR000679 GO:0006355|GO:0043565
Vvi5g0133 153 MobiDBLite consensus disorder prediction 1 59 - -
Vvi5g0133 153 Gene3D - 31 95 IPR013088 GO:0006355|GO:0008270
Vvi5g0133 153 MobiDBLite consensus disorder prediction 15 37 - -
Vvi5g0133 153 MobiDBLite consensus disorder prediction 74 89 - -
Vvi5g0133 153 Pfam GATA zinc finger 36 70 IPR000679 GO:0006355|GO:0043565
Vvi5g0133 153 MobiDBLite consensus disorder prediction 72 107 - -
Vvi5g0133 153 ProSiteProfiles GATA-type zinc finger domain profile. 30 66 IPR000679 GO:0006355|GO:0043565
Vvi5g0133 153 PANTHER OS01G0976800 PROTEIN 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0133 Vvi-Chr5 1163896 1164542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0133 1 153 C2C2-Gata Transcription Factor Family AT5G49300 59.355 2.34e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi5g0133 GATA 4.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0133 - - vvi:100253375 283.493