LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g0131	ATGTCTCTGAGACCCAGCGCTAGAACCGAGGTTCGCCGGAACCGGTATAAGGTCGCCGTCGATGCCGAGGAAGGCCGGAGACGGAGGGAAGACAACATGGTTGAGATCCGTAAGAGCAAACGCGAGGAGAGCTTGCAGAAGAAGCGTCGTGAAGGTCTCCAGGCTCAGCAGTTCCCTGCCGCTGCTCACGCTTCCACTGTCGAAAAAAAGTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTGAACGTAGTCCGCCAATTGAGGAAGTTATTCAATCTGGGGTGGTTCCTCGCTTTGTGGAATTTCTTGTTAGGGAGGATTTCCCACAGCTTCAGTTTGAGGCAGCTTGGGCTCTCACAAACATTGCTTCTGGGACATCAGAAAATACCAAGGTGGTAATTGATCATGGAGCAGTGCCAATATTTGTGAAGCTACTTGGTTCTCCAAGTGATGATGTTCGGGAGCAGGCTGTCTGGGCTTTGGGAAATGTTGCTGGTGACTCACCCAGATGCCGTGATCTTGTCCTTGGTCATGGGGCCTTGATTCCATTGCTAGCACAGTTGAATGAGCATGCCAAACTTTCAATGCTAAGAAATGCCACATGGACTCTATCAAACTTCTGCAGAGGCAAGCCTCAGCCACCATTTGATCAGGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTACAAATGACAAAATTCAAGCAGTGATCGAGGCAGGTGTCTGCCCCAGACTTGTTGAGCTCCTCCTTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAGTCTATAATTAATCATGGTGCACTTCCGTGCCTTCTGAGCCTGTTGACCCATAATCATAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAATATTACAGCTGGAAACAAGGAACAGATCCAGGCTGTTATCGAGGCTGGTGTAATTGCCCCCTTGGTTCATTTGCTTCAAACTGCCGAGTTTGATATAAAGAAAGAGGCAGCATGGGCAATATCGAATGCTACTTCTGGTGGCACTCATGAACAAATCAAGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATACTGAAGGTTGGGGAAGCTGAGAAGACTCTAGGCAACAGTGGAGATGTTAATTATTATGCCCAATTGATAGACGATGCTGAAGGGTTAGAAAAGATTGAGAATCTTCAGAGTCATGATAACAATGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATATTGGTTGGAGGAGGAGGATGAAACATTGCCTTCAGGTGATGGTTCCCAGCCTGGTTTCCAATTTGGAGGCAATGATGTTTCAGTTCCATCAGGTGGATTCAACTTTAGCTGA	1590	0.4736	MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPAAAHASTVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGNDVSVPSGGFNFS*	530

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g0131	529	MobiDBLite	consensus disorder prediction	22	56	-	-
	Vvi5g0131	529	PANTHER	IMPORTIN ALPHA	12	500	-	-
	Vvi5g0131	529	SUPERFAMILY	ARM repeat	13	499	IPR016024	-
	Vvi5g0131	529	SMART	arm_5	315	356	IPR000225	GO:0005515
	Vvi5g0131	529	SMART	arm_5	358	398	IPR000225	GO:0005515
	Vvi5g0131	529	SMART	arm_5	232	271	IPR000225	GO:0005515
	Vvi5g0131	529	SMART	arm_5	273	313	IPR000225	GO:0005515
	Vvi5g0131	529	SMART	arm_5	147	187	IPR000225	GO:0005515
	Vvi5g0131	529	SMART	arm_5	401	441	IPR000225	GO:0005515
	Vvi5g0131	529	SMART	arm_5	104	145	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g0131	Vvi-Chr5	1149167	1153335	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g0131	322	468	U-box Gene Family	AT2G23140	29.730	1.59e-07	52.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g0131	K15042		-	vvi:100248248	1053.51

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