Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0128 ATGCGCTCTACTCCCCCTCCCGACCCTCCCCGCCAGTTTCATTCATGTTATGTTGATTTACCGTTATTGGCGGTTGATATAAGCTCCAGTTATTCTATATGCAGCTTCACCAATCTGATACAAAGAATGTCTGAAGGAACTAGTCTTGTGATGGAATCTTCTGAAAATGGCACGGATTTATCTCAAGATGACATTGGAACTGTCGAGGAAATACCTGAAGACACAATTTTGTCACGGCAAACTTCTGTGAATCTTGTTCCATTTCTTGGGCAAAGATTTGTTTCTCAAGATGCCGCTTATGAATTTTATTGCAGTTTTGCAAAGCAATGTGGCTTTTCAATTAGACGTCACCGCACTCGAGGAAAAGATGGTGTTGGTCGGGGAGTTACAAGAAGGGATTTTACTTGCCATCGTGGTGGCTATCCACAGATAAAACCATCTGAGGATGGAAAACTGCAAAGAAATCGAAAGTCATCACGTTGTGGCTGCCAAGCCTATATGCGCATTGTCAAACGGGCAGATTTTGATGTACCTGAATGGCGTATTACGGGATTTAGCAACATCCATAATCATGAACTCTTGAAATCAAATGAAGTGCGTCTTCTTCCTGCCTACTGTTCCATATCTCCAGATGACAAAAGTCGGATTTGTACTTTTGCCAAAGCTGGCATGTCAGTGCGACAAATGTTAAGATTGTTGGAGCTAGAGAAAGGTGTCAAACTGGGTTGCTTACCATTTACAGAAATTGATGTGAGAAACCTACTGCAGTCTTTCAGAAATGTGGATAGGGATAATGATGCTATTGATCTTATTGCAATGTGCAAGAAACTGAAGGATGAAAATCCCAACTTCAAATATGACTTCAGGATTGATGGACATAATAGAGTGGAGCATATTGCGTGGTCCTATGCCTCCTCTGTCCAATTGTACGAAGCATTTGGGGATGCTGTGGTTTTTGACACGACCCACCGTCTGGATGCCTATGATATGCTCCTAGGTGTTTGGGTTGGAGTGGACAATCATGGAATTACTTGTTTTTTTGGCTGTGTGCTTCTACGGGATGAAAATGTACAGTCATTTTCCTGGGCATTGAAGACTTTTTTGGGCTTCATGAAAGGAAAGGCTCCACAAACAATATTGACTGACAAGAACATGTGGCTGAAAGAGGCTATTGCTATTGAAATGCCTGCCACTAAACATGCCTTTTGCATTTGGCATATTATTGTGAAGTTCTCAGATTGGTTCTCTGTACTGCTTGGCTCACAATATGATGATTGGAAAGCTGAGTTTCATCGGCTCTATAATTTGGAATTGGTGGAAGATTTTGAGCAAGAATGGAGGGAGATGATTAATAAATATGGACTGCATGAAAATAAGCATATTGCCAGCTTATATGCACTACGTACATACTGGGCTTTACCATTCTTGAGATGTTACTTCTTTGCAGGAATGATGACCACATTCCAACCTGAGTCCATAAATGCTTTGATTCAACGATTTTTGAGTGCACAGTCTCAACTTGATCATTTCATAGAGCGAGTGGCTGATATTGTTGATTTTAACGATCAGGCAGGAGCAAAGCAAAAGATGCAACAAAAAATGCACAAAGTCTGCCTTACAACAGGTTCACCAATTGAATCACATGCTGCTGCTGTCCTTACACCTTATGCCTTCAGTAAATTTCAAGAAGAGTTTGTCTCAGCTCCAAAGTATGCATCTATTCTTCTAGATGAAGGTTGTTTCCATGTCAGGCACCACACCCAGGTGGATGGTGGGTGCAAAGTAATTTGGGTCCCTCGGCAAGAGCTCATTAGCTGTAGCTGCCATCAATTTGAGTTTTCAGGCATCCTTTGTAGACATGTTCTCCGAGTCCTATCAACTAATAACTGTTTTCACATTCCAGACCAATATCTGCCCATCCGTTGGCATGGTGTTAGTTCATCTTCTACAAAACTCTCCCAGGCTACAACTCCAAGAGAGCATGCTGAGAGGATTCAGCTATTAGAGTCCATGGTTTCAACAATTATTACAGAATCGATGGAAACAGAGGAACGTCTTGATGAGGCTTGTGAGCAAATTGCCATGGTGTTAGCTCATATTAAAGAACTTCCTAGACCAACACACAATGGGGTTGATATCTCTAGAAAGCAAAGACATTGTTCCTTGTCTTTTTGCGGGCAGTTTGAACATGATTCATCTGACTGTCCAATAATTGAAGGTGATAATTTGACTGGTGATGCACTAGGGTTCTTATAG 2256 0.4153 MRSTPPPDPPRQFHSCYVDLPLLAVDISSSYSICSFTNLIQRMSEGTSLVMESSENGTDLSQDDIGTVEEIPEDTILSRQTSVNLVPFLGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSEDGKLQRNRKSSRCGCQAYMRIVKRADFDVPEWRITGFSNIHNHELLKSNEVRLLPAYCSISPDDKSRICTFAKAGMSVRQMLRLLELEKGVKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKKLKDENPNFKYDFRIDGHNRVEHIAWSYASSVQLYEAFGDAVVFDTTHRLDAYDMLLGVWVGVDNHGITCFFGCVLLRDENVQSFSWALKTFLGFMKGKAPQTILTDKNMWLKEAIAIEMPATKHAFCIWHIIVKFSDWFSVLLGSQYDDWKAEFHRLYNLELVEDFEQEWREMINKYGLHENKHIASLYALRTYWALPFLRCYFFAGMMTTFQPESINALIQRFLSAQSQLDHFIERVADIVDFNDQAGAKQKMQQKMHKVCLTTGSPIESHAAAVLTPYAFSKFQEEFVSAPKYASILLDEGCFHVRHHTQVDGGCKVIWVPRQELISCSCHQFEFSGILCRHVLRVLSTNNCFHIPDQYLPIRWHGVSSSSTKLSQATTPREHAERIQLLESMVSTIITESMETEERLDEACEQIAMVLAHIKELPRPTHNGVDISRKQRHCSLSFCGQFEHDSSDCPIIEGDNLTGDALGFL* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0128 751 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 82 701 IPR031052 GO:0006355
Vvi5g0128 751 Pfam MULE transposase domain 317 408 IPR018289 -
Vvi5g0128 751 Pfam SWIM zinc finger 600 627 IPR007527 GO:0008270
Vvi5g0128 751 Pfam FAR1 DNA-binding domain 101 194 IPR004330 -
Vvi5g0128 751 ProSiteProfiles Zinc finger SWIM-type profile. 594 629 IPR007527 GO:0008270
Vvi5g0128 751 SMART 26again6 604 631 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0128 Vvi-Chr5 1135154 1141477 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g0128 MULE 1.8e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0128 - - vvi:100249868 1521.91