Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0127 ATGTCAGATAGCTCACCCCAAGACAAGTCATTTTCAGAATACTCCCACGCTCATCCTAACACTTCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCGGTTATGAAGCTTTTTGGTTTTCCAGTTACAGAGGCTGATGAAGCTCCGCTTACACCTTCCAATGACGCTGACATAAGAAAATTTGAGTGTCAGTACTGTCGCCGTGAGTTCGCCAATTCTCAAGCCCTTGGTGGCCACCAGAATGCCCACAAGAAGGAGAGGCAAAGAGCGAAGCGAGCCCAGTTTCAGACCGATCACCATCGGCGGTTCGCCGCTGCGGTCCCCATTCTCACTGCACATGCAGTGCGATCAGGGCCGTTCATTTGCGCTGGTGGGTCGTCTAGCATGGGCTCCGCCGCGCGGTTCCGGTCGTCGCCGGAGTGCTGCGTGTGGTCCCCGGGACCACCGCCGATGCTGCCGGCTCCGTCTGCGGGAGTTCCGTATTGCTTTTACCTGGGACGGCAGCAGGGCCGGCCTATGTCGGTCGGCCCCGGCGAGTTGGGCCACGGAGGTGGTGAAGTGAGTGAAAGAGCTGACGTGGATCTCCATCTAAGACTCGCGCCTTCATCGTCCTCATGA 624 0.5609 MSDSSPQDKSFSEYSHAHPNTSSSSSSSSSSSSSSVMKLFGFPVTEADEAPLTPSNDADIRKFECQYCRREFANSQALGGHQNAHKKERQRAKRAQFQTDHHRRFAAAVPILTAHAVRSGPFICAGGSSSMGSAARFRSSPECCVWSPGPPPMLPAPSAGVPYCFYLGRQQGRPMSVGPGELGHGGGEVSERADVDLHLRLAPSSSS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0127 207 FunFam Zinc finger protein 6 51 118 - -
Vvi5g0127 207 SUPERFAMILY beta-beta-alpha zinc fingers 61 90 IPR036236 -
Vvi5g0127 207 PANTHER ZINC FINGER PROTEIN 5 22 205 IPR044299 GO:0010090
Vvi5g0127 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Vvi5g0127 207 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vvi5g0127 207 MobiDBLite consensus disorder prediction 175 195 - -
Vvi5g0127 207 Gene3D Classic Zinc Finger 51 110 - -
Vvi5g0127 207 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0127 Vvi-Chr5 1128866 1129489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0127 31 116 C2H2 Transcription Factor Family AT1G67030 45.918 1.54e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi5g0127 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0127 - - vvi:104879210 380.563