Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0124 ATGGGGAGAGCACCATGTTGTGAGAAAATGGGGTTGAAAAAGGGAAGATGGACAGAGCAAGAAGATGAGATCTTGAGGAAGTACATTCAAGCCAATGGAGAAGGATGCTGGAGGTCACTGCCCAAAAATGCTGGTTTGTTAAGGTGTGGGAAGAGTTGCAGACTGAGATGGGTTAACTACCTGAGAGATGACTTGAAGAGAGGCAACATAACTGCTGAAGAGGAAGATACCATCGTGAAGTTGCATAGTTCTTGGGGTAACAGGTGGTCTTTGATAGCTGGTCATTTGCCTGGAAGAACAGATAATGAGATAAAGAACTACTGGAACTCTCACTTGAGCAGAAGAATCATCAGCTTCACCAGGCCCAGTACTGAATCCATACCCTCCTCCCCACCCATGGTCAAGACAGATGGCTCAAACAAACAAAAGGGCAAGCGAAAAAGCCGATCAAGGTTCAGCACAAGCAAAAAGACCGCGCCCTCCATCGTTGAAATGCCACTCAGGAAGCCAGGAATTGGTGCAGTGAGTGAGGTGCTTGCCAAAGAAAAAGGAACCATACTTAGTACCATTACTGGGAAAGTTGAGGAAACGGGTGAAAAAATGAGTTTGGAGTCTTTAGACTCAAATGAAGGAGGGGACAGAAGAAGCCAGCTTGGTGTGCAAGGCTCTTGTATGGAAAGCGGGGTAAGCATAATGGATCAATTTGAGGAGACACAAAGTGTAGCACTGTCTGCAGGTGAAGTTACTACAAGCAATGTCGGGTTGTATTCAAATGAGGCGAGAAAAACAGGAGTGTTGGGACCATTTGAAGAGCAAGGTAGTGAAATAATGTGCCTTGATAACTTTCTGGAAGGTGGGGTTATGGATCCAAATGGGGCTATGACCCCTAAAGAGAAGAGACAGAATGTCACTATTAGTAAGGAGATAGAAAGCCTTGAAATGGACCCAGAGAAGGTAAGAGCTAGTGAGGGAAGTGAAAGTGGTAATTGGAGCTCAAATGCAGAGATTGGGGAGTGGTTTACTCCTTCATCAATGAATTCAGGCTTGAACTTTGAGTGTGTAGGTTGGGAGTGGGAGAATTGTGTTGAAAGCTATGAGCTTTGGGATGGAGGGTTGGACATGTTATCTTGGTTTTGGGGGAGTGGTATTTAA 1152 0.4523 MGRAPCCEKMGLKKGRWTEQEDEILRKYIQANGEGCWRSLPKNAGLLRCGKSCRLRWVNYLRDDLKRGNITAEEEDTIVKLHSSWGNRWSLIAGHLPGRTDNEIKNYWNSHLSRRIISFTRPSTESIPSSPPMVKTDGSNKQKGKRKSRSRFSTSKKTAPSIVEMPLRKPGIGAVSEVLAKEKGTILSTITGKVEETGEKMSLESLDSNEGGDRRSQLGVQGSCMESGVSIMDQFEETQSVALSAGEVTTSNVGLYSNEARKTGVLGPFEEQGSEIMCLDNFLEGGVMDPNGAMTPKEKRQNVTISKEIESLEMDPEKVRASEGSESGNWSSNAEIGEWFTPSSMNSGLNFECVGWEWENCVESYELWDGGLDMLSWFWGSGI* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0124 383 CDD SANT 16 61 IPR001005 -
Vvi5g0124 383 Gene3D - 11 67 - -
Vvi5g0124 383 MobiDBLite consensus disorder prediction 198 220 - -
Vvi5g0124 383 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vvi5g0124 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi5g0124 383 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi5g0124 383 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi5g0124 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi5g0124 383 SMART sant 13 63 IPR001005 -
Vvi5g0124 383 SMART sant 66 114 IPR001005 -
Vvi5g0124 383 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi5g0124 383 FunFam Myb transcription factor 11 67 - -
Vvi5g0124 383 MobiDBLite consensus disorder prediction 122 137 - -
Vvi5g0124 383 CDD SANT 71 112 IPR001005 -
Vvi5g0124 383 MobiDBLite consensus disorder prediction 314 333 - -
Vvi5g0124 383 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi5g0124 383 MobiDBLite consensus disorder prediction 122 160 - -
Vvi5g0124 383 Gene3D - 71 158 - -
Vvi5g0124 383 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0124 Vvi-Chr5 1104556 1106597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0124 1 123 MYB Transcription Factor Family AT5G49330 82.114 1.81e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi5g0124 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0124 K09422 - vvi:100251652 764.222