Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0112 ATGGAGAGTAGCGTGCCAGGTCGACTTGCAGGATGGGATATTCATGGCTTCCGTACAATGGAAGATTTGGATGTTGACAGCATATTGGAAGAAGCCAAGGGGAGGTGGCTACGGCCAAATGAAATTCATGCAATACTTTGTGGCAAAATTGTATTGTTTGACCGTAGAATGCTGCGGAACTTTCGGAAAGATGGTCATAACTGGAAGAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAACATTTAAAAGTTGGTAATGACGAAAGGATCCATGTTTATTATGCACATGGCCAAGATAACCCGACCTTTGTTCGCAGGTGTTACTGGCTTCTTGATAAGACACTGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTCGCAGGGTTCTCCAGTCACACCTGTGAATTCCAGTCCAAGTCCTAATTCAGCCACCTCTGACCCATCTGCTCCTTGGCTTTTATCAGAAGAAACTGATTCTGGGACTGGTAGTACATACCGTGCTGGTGAGAAAGAACATCAAGAGCCTAGGGATAGTATAACTGTCAGAAATTATGAGATGAGAATTCATGAGCTTAATACACTTGAATGGGATGAGCTTTTGGTGTCAAATGATCCCAACAATTCAATGGCACCTAAGGAAGGAAAAATTTCATCCTTTGAGCAACAGAATCAACATGTAATAACAAGTTCCAACAGTTATAATAGGCCCCATTCAACCAATGATTTGCCAGTAGGAATTTCTCCTTTGGGGAATCCTGCGGAATCAATTGCTGGGAATGAATCTGCCCATTTCAATTTTCTGGATGATGTTTACTTTCAGAAAATAGGGGGTCAAGTGAATCCAAATGGGCAGAGAAGGGATTCTGTTGCAGTGGGAACCGGTGATCCTGTGGACATTTTGCTCAAAGATAGTTTGGAACCTCAGGACAGTTTTGGAAGGTGGATGAACTATATCATGACCGATTCTCCAGTATCAGTAGATGATCCATCACTTGGTTCCCCTGTTTCAAGTAGTCATGATTCAGTAGTCTCTGCAGCGGGGAATCATCAACAATCTTCTGTTCCTGATACAATATTCAGTATAACTGACTTCTCACCTTCATGGGCCATTTCAACTGAAAAAACCAAGATCCTGGTGATTGGTTTTCTTCATGAAAATTATGCAGATCTTGCAAAGTCCAATCTATTTTTTGTCTGTGGTGATGTATGTGTTCCTGCAGAAATCATCCAACTTGGGGTATTTCGATGTTTGGTACCACCACATGCCCCTGGATTAGTAAATTTTTATTTGAGTTTTGATGGCCATAAACCTATCAGCCAAGTTGTGACTTTTGAGTATCGGGCTCCTTTATTGTATAACCAGACAGTTTCTTCAGAAGTTGAAACCAATTGGGAGGAGTTTCAGTTTCAGATGAGGCTTTCTCATTTACTTTTCTCTACATCCAAGGGCCTTAACATTATGTCCAGCAAAATATCACCAAATGCCCTGAGGGAAGCAAAGAATTTTGTCAAAAAGACCTCTTTCATTGCCAGGAATTGGGCAAATTTGACCAAGACAATTGGAGACAACAGAATCTTGGTTTCACAAGCAAAAGACCTTTTGTTTGAGTTTGCATTGTTAAACAAATTACAGGAATGGCTAGTGGAAAGAATTGTTGAGGGGGGTAAAACCTCAGAGCGCGATGGTCAGGGTCAAGGGGTAATCCATTTGTGTGCTATGCTAGGCTATACACGAGCTGTTTATCTATATTCACTATCAGGCTTATCATTGGATTACCGCGATAAATTTGGATGGACAGCTCTTCATTGGGCTGCATACTATGGAAGGCAGAAAATGGTTGCCGTGCTTTTATCTGCAGGGGCGAAGCCCAACTTGGTCACAGACCCCACCTCAGAAAACCCTGGTGGATGCACTGCTGCTGATCTTGCATCTAAGGAAGGTCATGATGGCTTAGCAGCTTATCTTGCAGAAAAGGGGTTAGTAGAACAGTTCAACGATATGACCTTGGCCGGAAATGTCAGTGGTTCACTGCAAGTTAGCACAACCGAACAAATAAATTCAGAGAACCTCAGTGAGGAGGAGATGAATTTAAAGGATACTTTGGCAGCATATCGGACAGCTGCTGATGCAGCAGCACGTATACAGGTTGCATTCAGGGAGCGCTCACTAAAGTTAAGGACAAAAGCAGTTGAAAATTGCAATCCAGAGATTGAGGCACGCAATATAGTCGCAGCAATGAGGATTCAGCATGCCTTTCGCAACTATGAGACACGAAAAAGGATGGCCGCTGCTGCTCGAATTCAACATAGGTTTCGTAGTTGGAAGATACGAAAAGAGTTCCTCAATATGCGTCGCCAAGCAATTAAAATTCAAGCTGTTTTCCGGGGCTTCCAAGTGCGGAGGCAGTACCGCAAGATTCTATGGTCAGTTGGAGTCCTTGAGAAGGTGATTCTGCGCTGGCGTATGAAGAGGAAAGGCTTCCGTGGGCTTCAGGTTGACACTGTTGATCAACTTCAAGAAAGTGACACAGAGGAGGACTTCTTCCGGGCCAGCAGGAGACAAGCTGAAGACCGTGTTGAGAGATCTGTTATACGTGTTCAAGCGATGTTCCGTTCAAAGAAAGCTCAAGAAGAATACCGGAGAATGAAGTTGGCCCACAATGAAGCAAAGCTGGAATTTGAAGGTTTTATTGATCCTGATACCAACATGGATGGATGA 2733 0.4307 MESSVPGRLAGWDIHGFRTMEDLDVDSILEEAKGRWLRPNEIHAILCGKIVLFDRRMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNDERIHVYYAHGQDNPTFVRRCYWLLDKTLEHIVLVHYRETQESQGSPVTPVNSSPSPNSATSDPSAPWLLSEETDSGTGSTYRAGEKEHQEPRDSITVRNYEMRIHELNTLEWDELLVSNDPNNSMAPKEGKISSFEQQNQHVITSSNSYNRPHSTNDLPVGISPLGNPAESIAGNESAHFNFLDDVYFQKIGGQVNPNGQRRDSVAVGTGDPVDILLKDSLEPQDSFGRWMNYIMTDSPVSVDDPSLGSPVSSSHDSVVSAAGNHQQSSVPDTIFSITDFSPSWAISTEKTKILVIGFLHENYADLAKSNLFFVCGDVCVPAEIIQLGVFRCLVPPHAPGLVNFYLSFDGHKPISQVVTFEYRAPLLYNQTVSSEVETNWEEFQFQMRLSHLLFSTSKGLNIMSSKISPNALREAKNFVKKTSFIARNWANLTKTIGDNRILVSQAKDLLFEFALLNKLQEWLVERIVEGGKTSERDGQGQGVIHLCAMLGYTRAVYLYSLSGLSLDYRDKFGWTALHWAAYYGRQKMVAVLLSAGAKPNLVTDPTSENPGGCTAADLASKEGHDGLAAYLAEKGLVEQFNDMTLAGNVSGSLQVSTTEQINSENLSEEEMNLKDTLAAYRTAADAAARIQVAFRERSLKLRTKAVENCNPEIEARNIVAAMRIQHAFRNYETRKRMAAAARIQHRFRSWKIRKEFLNMRRQAIKIQAVFRGFQVRRQYRKILWSVGVLEKVILRWRMKRKGFRGLQVDTVDQLQESDTEEDFFRASRRQAEDRVERSVIRVQAMFRSKKAQEEYRRMKLAHNEAKLEFEGFIDPDTNMDG* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0112 910 ProSiteProfiles IQ motif profile. 788 812 IPR000048 GO:0005515
Vvi5g0112 910 SMART ANK_2a 601 630 IPR002110 GO:0005515
Vvi5g0112 910 SMART ANK_2a 640 671 IPR002110 GO:0005515
Vvi5g0112 910 FunFam Calmodulin-binding transcription activator 2 765 812 - -
Vvi5g0112 910 MobiDBLite consensus disorder prediction 170 186 - -
Vvi5g0112 910 ProSiteProfiles IQ motif profile. 749 775 IPR000048 GO:0005515
Vvi5g0112 910 Pfam CG-1 domain 47 127 IPR005559 GO:0003677
Vvi5g0112 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 815 IPR027417 -
Vvi5g0112 910 MobiDBLite consensus disorder prediction 128 186 - -
Vvi5g0112 910 ProSiteProfiles Ankyrin repeat region circular profile. 601 629 - -
Vvi5g0112 910 FunFam calmodulin-binding transcription activator 5 531 671 - -
Vvi5g0112 910 Coils Coil 877 897 - -
Vvi5g0112 910 SMART iq_5 764 786 IPR000048 GO:0005515
Vvi5g0112 910 SMART iq_5 863 885 IPR000048 GO:0005515
Vvi5g0112 910 SMART iq_5 787 809 IPR000048 GO:0005515
Vvi5g0112 910 SUPERFAMILY E set domains 366 452 IPR014756 -
Vvi5g0112 910 Gene3D Immunoglobulins 360 455 IPR013783 -
Vvi5g0112 910 Gene3D - 766 812 - -
Vvi5g0112 910 SMART CG_1_2 28 129 IPR005559 GO:0003677
Vvi5g0112 910 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 892 - -
Vvi5g0112 910 MobiDBLite consensus disorder prediction 128 169 - -
Vvi5g0112 910 Pfam Ankyrin repeats (3 copies) 544 630 IPR002110 GO:0005515
Vvi5g0112 910 SUPERFAMILY Ankyrin repeat 552 667 IPR036770 -
Vvi5g0112 910 Gene3D - 514 664 IPR036770 -
Vvi5g0112 910 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Vvi5g0112 910 ProSiteProfiles IQ motif profile. 865 893 IPR000048 GO:0005515
Vvi5g0112 910 ProSiteProfiles CG-1 DNA-binding domain profile. 25 134 IPR005559 GO:0003677
Vvi5g0112 910 Pfam IQ calmodulin-binding motif 790 809 IPR000048 GO:0005515
Vvi5g0112 910 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0112 Vvi-Chr5 987059 999296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0112 28 898 CAMTA Transcription Factor Family AT3G16940 54.270 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vvi5g0112 Ank_2 4.7e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0112 K21596 - vvi:100243111 1732.23