Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0110 ATGGCGAAGTCGAAGAACCACACAGCTCACAACCAATCGTACAAGGCCCACAAGAACGGCATCAAGAAGCCCCGCAAACACCGCCACGCTTCCACCAAAGGGATGGACCCGAAGTTCTTGAGGAACCAGAGGTACGCGAGGAAGCACAACAAGAAGAGCGGTGAATCCGCCACCGAGGAAGAATAG 186 0.5484 MAKSKNHTAHNQSYKAHKNGIKKPRKHRHASTKGMDPKFLRNQRYARKHNKKSGESATEEE* 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0110 61 PANTHER 60S RIBOSOMAL PROTEIN L29 1 59 IPR002673 GO:0003735|GO:0005840|GO:0006412
Vvi5g0110 61 MobiDBLite consensus disorder prediction 1 61 - -
Vvi5g0110 61 Gene3D - 1 61 - -
Vvi5g0110 61 Pfam Ribosomal L29e protein family 3 42 IPR002673 GO:0003735|GO:0005840|GO:0006412
Vvi5g0110 61 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0110 Vvi-Chr5 980397 980679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0110 1 61 Cytoplasmic Ribosomal Protein Gene Family AT3G06700 83.607 3.88e-33 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0110 K02905 - vvi:100251756 130.954