Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0102 ATGTCGTCTGCGCAATACGGAAGCGCAGGGTTGAAAGAGAACTCACCGTGCGGAGCGGTTGATGAGAAGAAGAGGAAGAGGATGATCTCGAACCGAGAGTCCGCGAGGCGGTCGAGGATGAGGAAGCAGCAGCATTTGGACGATCTGATAAAGCGCAAGAGTGAATTGGAGAATCAAAGGCTTGAGATCAAACGAAGGATCGATATGTTCCAGAAACTGTGGGAAGCGACTGTGGGGGAGAACAATGCGTTGGAGGCTCTCAAGGCAGAACTCACCAAAGAATTGGAGTCCGCCAAATCTTGTGTCAGTGATTTCAAAGCGATCGATAGGTTGGAGACGAATTTCGCTGGAAATCGGATGCTGAAGCCATTGATGGATGTCTCTGGAGCTCGAGAGATTGTTCTACAACCATGGCAGCTTGGGCGCTCATCACAGCCGATCGCTGCTACCATGTTTCAGTTTTAG 465 0.5032 MSSAQYGSAGLKENSPCGAVDEKKRKRMISNRESARRSRMRKQQHLDDLIKRKSELENQRLEIKRRIDMFQKLWEATVGENNALEALKAELTKELESAKSCVSDFKAIDRLETNFAGNRMLKPLMDVSGAREIVLQPWQLGRSSQPIAATMFQF* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0102 154 Coils Coil 81 101 - -
Vvi5g0102 154 Pfam bZIP transcription factor 23 74 IPR004827 GO:0003700|GO:0006355
Vvi5g0102 154 Gene3D - 21 77 - -
Vvi5g0102 154 Coils Coil 39 73 - -
Vvi5g0102 154 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Vvi5g0102 154 MobiDBLite consensus disorder prediction 1 46 - -
Vvi5g0102 154 FunFam BZIP transcription factor 21 72 - -
Vvi5g0102 154 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 72 IPR004827 GO:0003700|GO:0006355
Vvi5g0102 154 PANTHER BZIP TRANSCRIPTION FACTOR 44 13 148 - -
Vvi5g0102 154 SUPERFAMILY Leucine zipper domain 23 75 IPR046347 GO:0003700|GO:0006355
Vvi5g0102 154 CDD bZIP_plant_GBF1 24 72 IPR045314 GO:0003700|GO:0006355
Vvi5g0102 154 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Vvi5g0102 154 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0102 Vvi-Chr5 878360 878824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0102 1 154 bZIP Transcription Factor Family AT3G62420 37.179 1.90e-21 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi5g0102 bZIP_1 6.1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0102 K25786 - vvi:100260200 285.804