Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0100 ATGATTTGTTTCCGCTGCGTAGATCATGGTTTCTATCACTATGGTTCTGCGATTTTGGGAAGCAGTGGAGGAAGAAAGAAAGGGAATCAAACTCAGTTTTATGGAGCAGGAGATGGGGGAGAATCAGCCAACAGTGATAACCTTTGTTCTGGCTTCGGGTTCGGATTCGATCAAGAAAACGCAGATGATGAAGGGTTTCTACTGTCCAAGTATCAACAACAAGAGGATGAGCAGCAGAAACAATCATTTTTGGATTATGAGTTTCTTGATGATCTTCATTTTGATGTGGTCTCTCAGCCAATTCAATTATGCCAGGACTACATGATCAATCCGAGCCGAACCCCAACTGGAATTCCCAACCTTGTTGAGCCTAAGAAGAAGAAGGGCTGCCCATTTTCCTCAACCTCGCTTGAGCTTCTCAAGAATTACAGAAGTGGGATCAGACTCTTGAATGAGGAAAAGCTGAATGAGCCAAAGCATGATACAGCAAGCAGTGAAGCAGCTTGGCGACGGTTATCTACTGAAGAAGTAATGCGGGTGGCTGGAGAAAGGTTCATGCAGTCTTTCCAAAGCAGTGATGGTATCTCCATGCTTAGCCATCCATTTGGCCTTTCTTTCTCTGGCCTCTCCGAGGAGGAGAGCAGAGACGTGAGGCTCGCTGAAGTCCTTTTGGCTTCTGTTGAGAAAGTAGTCAATCAACAATTCGAGGCTGCAAGCAGAATGCTCAACCAGTGTGATTACTTCTCTTCCAGTACTAGGAATCCAGTTCAAAGAGTTGTTTACCACTTCTCTGAAGCTCTTCGAGAGAAGATTCATAGAGAAACCGGAAGAATCAGATTCAAGTCCCCAAGAAGTGAAGAGTCATTTGATCCAGAAGAGTCAAGGATGGGCTTAAACCCCACCCTCCTTGCAAATCACCAAGAAGTTCCTTTCAGTCAGGTTGCGCGGTTCACTGGAATCCAAGTCATACTAGAGAATGCGGCCGAGGCGAAGAGGGTTCATTTGATCGATCTCGAAATCAGAAGTGGCGTGCAGTGGACAATCTTGATGCAGCTCTTGCAGTCAGGTATGAATGCCGCCTTGAGCTTCTTAATATTACCGCTGTTGGAACAACATCGAGGCAGAAAATCGAGGAGACAGGTAGAAGGTTGCTTGTTTGAACCAGGATTTGAAAATAGAAGTATTACAGAGTATATGTACTTCGGGCATGGAATTAGAAACATTGTGGCAGCTGATGGAGACGAAAGGAAGGTGAGAAGTGTGAAGATAGATGTTTGGAGGGCGTTTTTTGCTCGGTTTGGAATGGTGGAGACGGAGCTGAGCAAGTCATCCTTGCACCAAGCAAGTCTGGTGGCTAAAGAATTTGCTTGTGGGAGTTCATGCACTCTAGATATGAACCAGAAATGCCTACTAATTGGGTGGAGAGGTACTCCAATTCTTTCTCTTTCAGCTTGGAATTTCCTTCGACGTGAAAAGAAAGGACTCGAAATGTGGATTCGTATCCAATTGACTGCTAGTTTCTAA 1524 0.4501 MICFRCVDHGFYHYGSAILGSSGGRKKGNQTQFYGAGDGGESANSDNLCSGFGFGFDQENADDEGFLLSKYQQQEDEQQKQSFLDYEFLDDLHFDVVSQPIQLCQDYMINPSRTPTGIPNLVEPKKKKGCPFSSTSLELLKNYRSGIRLLNEEKLNEPKHDTASSEAAWRRLSTEEVMRVAGERFMQSFQSSDGISMLSHPFGLSFSGLSEEESRDVRLAEVLLASVEKVVNQQFEAASRMLNQCDYFSSSTRNPVQRVVYHFSEALREKIHRETGRIRFKSPRSEESFDPEESRMGLNPTLLANHQEVPFSQVARFTGIQVILENAAEAKRVHLIDLEIRSGVQWTILMQLLQSGMNAALSFLILPLLEQHRGRKSRRQVEGCLFEPGFENRSITEYMYFGHGIRNIVAADGDERKVRSVKIDVWRAFFARFGMVETELSKSSLHQASLVAKEFACGSSCTLDMNQKCLLIGWRGTPILSLSAWNFLRREKKGLEMWIRIQLTASF* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0100 507 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 191 354 IPR005202 -
Vvi5g0100 507 Pfam GRAS domain family 391 485 IPR005202 -
Vvi5g0100 507 Pfam GRAS domain family 220 355 IPR005202 -
Vvi5g0100 507 ProSiteProfiles GRAS family profile. 210 486 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0100 Vvi-Chr5 871762 873594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0100 388 487 GRAS Transcription Factor Family AT1G14920 29.000 1.61e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi5g0100 GRAS 4.1e-20 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0100 - - pvy:116122852 324.709