Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0098 ATGTTTGAAAAAAAGAGGCTAAGACACGGAGCATATTTCATTCTACCCAAAAGCCTGAACTCCATTCTCATCCACTTTCTCAGACCATCTCCACAAATGGTCTCATCCATCTCCACCTTGGTCCTCCTCCTTGCCACCATTTCTTCGGTCACTGCCGCCACCGCAAATGACAATTACACCACCCTGCTCAGCCTCAACTGCAACGGTACTAGAGCTGTCAATACCCAATCATTCGATGTGAATTTTGTGGATGCCATGGAAATTATATCTCAGGAAATTGCCAGCTCCGGTTTTGGCATGGCGGAATCCGGTGAAAACGCTACGGACAAGGCTTATGGGCTCGGACAGTGCCTGAATTACCTCTCTAATGTAGATTGCAGGCTCTGTTATTCACAGAGTAGAGTCCAGCTTCCACTTTGCTTGCCATCAACTTCTGCCCGGGTTTACCTTAATGGTTGCTTCCTAAGGTATGGAAACTACAACTTCTCTGAAGAAGCCGTGGATGATTTGGATTCTGTGGCTTGTGGGTCTTCGGGGAATGTAACAGAGGTTGGATTCAGAGACGGGGCTAATGGGCTGATTCAGAATTTGACAAATGGTGCTTATGAAGATAGAGACTATTACAAAGAAGGGAATGCTACGATTTCTTCGGATGTCAAAATTTATGGAGTTGCTCAATGTTGGAGATCTCTGAATAAAAGTGGGTGCAGAGATTGTCTGGAAAAAGCAAGAGAGAAAATAGTTGGTTGTTTTCCTGCTTCTGAGGGAGCAGCTTTGAATGCTGGGTGTGTTGTTAGGTATTCAATGAATCCATTTTATGTGGCATCCTCAGCCAGCAGTGGTTCTTCTTCAGCAACTCGTCGTCGTGCGCTGGTTGCAACGTTATCGATTATTGCTGCAGTTTTGGTTATAGGGGCAGCTATTCTTTGGGGAAGAAGGCGACCTCCTACCAATGGTGATAGTGAAAACCCTGATGGCAGCTCAGAAATCCTCAGATTGATTTCAGAATCCCATCTCAGTTTCAAGTATGATGACCTGAGAAAAGCAACAAAGGACTTTGATCTGGGAAACAAGATAGGCCAAGGGGGATATGGTTCAGTTTATAAGGGAACCCTACCTGATGGGAGGGAAATTGCGGTCAAGAGACTCTTCATCAATACAACACAATGGCTGGATCAGTTCTTCAATGAAGTAAATCTAATCAGCCAGGTTCAACACAAAAACCTTGTTAAACTTCTTGGCTGCAGTGTAGAAGGCCCTGAGAGCCTCTTGGTCTATGAATACCTCTGCAACACCAGCCTTGATCGCTTTCTTTTCGATTCATTTAGGAAGAAAGCTTTGGATTGGGGGAAGAGGTCCGATATCCTTGTTGGTACAGCAGAAGGACTAGCTTACCTCCATGAAGCTTCTGAGGTCAGGATCATTCATAGAGATATCAAAGCTAGTAATATTCTTCTAGATGAAAGGCTGAAGCCAAAAATCGCAGATTTTGGGCTTGCAAGGTACTTTGCTGAGGGTCAGAGTCATCTCAGCACGGGTTTAGCCGGAACTCTCGGTTACATGGCTCCTGAATACGTCGTTCATGGGCAGTTAACAGAGAAGGCCGATGTCTACAGCTATGGAATACTTGTTCTGGAAGTACTCACAGGCAAGAAAAGTAATAGTTCCGTATCATCGTCTACTGAAAGCCAATCCCTCATTTCCCAGGTATGGGGGCATTTCAATACGAAAACACTGATTCAAGTACTTGATCTTGATCTTCAAGACCAGTGTTCTGAAAAAGAAGCTATAAATGTGTTCCAAGTAGGACTGCTCTGCACACAAGCATCCCCTAATCTTCGGCCACCAATGTGGAAGGTAGTTGAGATGCTGACAAGTAAATCTAAAGATCTTCCATTGCCCACACAGCCTCCTTTTGTAAACGTCAAGGGTGTTGAACTCAGGAGCAGCGGCTCTGAGAGCTCGATGAAGGGCTCATCATCTTCAAAGTTCCCGGTTTCAATGAACCGGATGTCACTGAGTATTATGCAAGGAAGATGA 2040 0.449 MFEKKRLRHGAYFILPKSLNSILIHFLRPSPQMVSSISTLVLLLATISSVTAATANDNYTTLLSLNCNGTRAVNTQSFDVNFVDAMEIISQEIASSGFGMAESGENATDKAYGLGQCLNYLSNVDCRLCYSQSRVQLPLCLPSTSARVYLNGCFLRYGNYNFSEEAVDDLDSVACGSSGNVTEVGFRDGANGLIQNLTNGAYEDRDYYKEGNATISSDVKIYGVAQCWRSLNKSGCRDCLEKAREKIVGCFPASEGAALNAGCVVRYSMNPFYVASSASSGSSSATRRRALVATLSIIAAVLVIGAAILWGRRRPPTNGDSENPDGSSEILRLISESHLSFKYDDLRKATKDFDLGNKIGQGGYGSVYKGTLPDGREIAVKRLFINTTQWLDQFFNEVNLISQVQHKNLVKLLGCSVEGPESLLVYEYLCNTSLDRFLFDSFRKKALDWGKRSDILVGTAEGLAYLHEASEVRIIHRDIKASNILLDERLKPKIADFGLARYFAEGQSHLSTGLAGTLGYMAPEYVVHGQLTEKADVYSYGILVLEVLTGKKSNSSVSSSTESQSLISQVWGHFNTKTLIQVLDLDLQDQCSEKEAINVFQVGLLCTQASPNLRPPMWKVVEMLTSKSKDLPLPTQPPFVNVKGVELRSSGSESSMKGSSSSKFPVSMNRMSLSIMQGR* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0098 679 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 112 660 - -
Vvi5g0098 679 ProSiteProfiles Gnk2-homologous domain profile. 168 272 IPR002902 -
Vvi5g0098 679 Pfam Salt stress response/antifungal 72 160 IPR002902 -
Vvi5g0098 679 Pfam Salt stress response/antifungal 183 268 IPR002902 -
Vvi5g0098 679 ProSiteProfiles Protein kinase domain profile. 353 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0098 679 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Vvi5g0098 679 Gene3D Transferase(Phosphotransferase) domain 1 429 637 - -
Vvi5g0098 679 ProSiteProfiles Gnk2-homologous domain profile. 60 162 IPR002902 -
Vvi5g0098 679 Pfam Protein kinase domain 355 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0098 679 SMART serkin_6 353 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0098 679 Gene3D Phosphorylase Kinase; domain 1 320 428 - -
Vvi5g0098 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Vvi5g0098 679 Gene3D - 172 272 IPR038408 -
Vvi5g0098 679 Gene3D - 58 162 IPR038408 -
Vvi5g0098 679 FunFam Cysteine-rich receptor-like protein kinase 2 170 272 - -
Vvi5g0098 679 SUPERFAMILY Protein kinase-like (PK-like) 338 645 IPR011009 -
Vvi5g0098 679 CDD STKc_IRAK 359 625 - -
Vvi5g0098 679 FunFam Cysteine-rich receptor-like protein kinase 2 60 162 - -
Vvi5g0098 679 FunFam Cysteine-rich receptor-like protein kinase 2 320 428 - -
Vvi5g0098 679 FunFam Cysteine-rich receptor-like protein kinase 2 429 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0098 Vvi-Chr5 850815 853541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0098 40 661 Receptor kinase-like Gene Family AT1G70520 45.755 1.37e-179 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi5g0098 Pkinase 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0098 - - vvi:100267135 1298.49