Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0093 ATGGCGTTCTGGTGGCCTTTGCTCGTTCTCGGATTTGCTTTCGCTCTCTGTAGATTCCTCTTGATGCTCATTCCGCCCAATGTACCTTCCATTGATGTAGACGCTTCTGATGTGTTGGACGATGGAAAGACCAAGGAGAACTCTTTCATCTATATACCTTCAAGGGGAAGGACACCTGAGAAAGTTCAGTGTTATGAGCCTGCAACGATGAAATACTTGGGATTCTGCCCTGCTTTGCGACCTGATGAGGTAAGAGAACATGTGGCACAGGCAAGGAAGGCTCAGAAAATATGGGCTCGGAGTAGCTTCAAGCAAAGACGACAATTTCTACGGATACTTCTCAAATATATTATCGAACATCAAGAGCTTATATGCGAGATCTCATCACGTGATACTGGAAAAACAATGGTTGATGCTTCTTTGGGAGAAATAATGACAACTTGTGAGAAGATCACCTGGCTTCTTTCAGAGGGTGAGAGGTGGTTAAAGCCTGAATACCGGTCTACTGGAAGGTCAATGCTTCACAAGACAGCCAAAGTGGAATTTCATCCCCTTGGTGTGATTGGTGCCATTGTCTCATGGAACTATCCATTTCATAATATCTTTAACCCAATGCTGGCAGCAGTCTTTTCAGGAAATGGTGTTGTGATAAAGGTTTCAGAACATGCTAGTTGGTCTGGATGTTTCTATTTGCGAATAATCCAGGCAGCCCTGGCTGCTGTTGGAGCTCCTGAAAATCTGGTTGATGTAATAACAGGGTTTGCTGAAACAGGAGAAGCACTAGTGTCTTCAGTTGACAAGATCATATTTGTTGGATCACCTGGTGTGGGTAAAACGATAATGAGAAATGCTTCTGATACACTGATCCCAGTAACACTTGAGCTTGGTGGAAAAGATGCATTTATTGTGTGTGAAGATGTAGACGTGCCTCATGTTGCACAAATTGCTGTTAGGGCTGCACTTCAATCTAGTGGACAGAACTGTGCTGGGGCTGAGAGATTTTATGTTCATCAGGACATTTATTCTAAATTTGTTGCTGAAGTAGTCAGAATTGTAAAATCCGTTACTGCTGGCCCTCCACTTTCCGGAAAGTATGACATGGGAGCCATATGCATGCAAGAGCATTCTGAAAAGCTTCAAAACCTTGTTAATGAAGCATTAGACAAAGGAGCAGAATTTGCTGGTCGTGGAAGTTTTGGCAATTTAGGTGAAGATGCAGTGGATCAATTCTTTCCTCCCACTGTGCTTGTAAATGTAAACCACTCAATGCAGTTGATGCAAGAAGAGGCATTTGGACCCATATTACCTATAATGAAATTTAGCTCTGATGAAGAGGTTGTCAAACTTGCAAATGATTCAAGATATGGGCTTGGGTGTGCAGTGTTTTCTGGCAGTCAGCGCCGCGCCAAAGCAATTGCCTCTCAGATACACTGTGGAATGGCTGCCATCAACGACTTTGCATCAACTTACATGTGCCAGTCTTTGCCATTTGGAGGTGTCAAAGACAGTGGATTTGGAAGATTTGCTGGCATAGAAGGATTGCGAGCTTGCTGTCTCGTAAAATCGGTTGTGGAGGACAGGTGGTGGCCATTCATCAAAACTAAGATTCCCAAGCCTATTCAGTATCCTGTAGCGGACAATGGTTTTGAGTTCCAGGAGTCACTTGTAGAGGCGCTTTATGGCTTGAATGTGTGGGATCGTTTACGAGCATTGGTCCATGTCCTAAAGATGCTTACAGAACAGAACACCCCTAGCAACAGCACCAAGAGAAAAAATGACTGA 1782 0.4383 MAFWWPLLVLGFAFALCRFLLMLIPPNVPSIDVDASDVLDDGKTKENSFIYIPSRGRTPEKVQCYEPATMKYLGFCPALRPDEVREHVAQARKAQKIWARSSFKQRRQFLRILLKYIIEHQELICEISSRDTGKTMVDASLGEIMTTCEKITWLLSEGERWLKPEYRSTGRSMLHKTAKVEFHPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNGVVIKVSEHASWSGCFYLRIIQAALAAVGAPENLVDVITGFAETGEALVSSVDKIIFVGSPGVGKTIMRNASDTLIPVTLELGGKDAFIVCEDVDVPHVAQIAVRAALQSSGQNCAGAERFYVHQDIYSKFVAEVVRIVKSVTAGPPLSGKYDMGAICMQEHSEKLQNLVNEALDKGAEFAGRGSFGNLGEDAVDQFFPPTVLVNVNHSMQLMQEEAFGPILPIMKFSSDEEVVKLANDSRYGLGCAVFSGSQRRAKAIASQIHCGMAAINDFASTYMCQSLPFGGVKDSGFGRFAGIEGLRACCLVKSVVEDRWWPFIKTKIPKPIQYPVADNGFEFQESLVEALYGLNVWDRLRALVHVLKMLTEQNTPSNSTKRKND* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0093 593 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 293 300 IPR029510 GO:0016491
Vvi5g0093 593 FunFam aldehyde dehydrogenase 22A1 61 310 - -
Vvi5g0093 593 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 321 332 IPR016160 GO:0016491
Vvi5g0093 593 FunFam Aldehyde dehydrogenase 22A1 301 496 - -
Vvi5g0093 593 CDD ALDH_F15-22 65 527 - -
Vvi5g0093 593 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 521 IPR016162 GO:0016491
Vvi5g0093 593 Pfam Aldehyde dehydrogenase family 60 523 IPR015590 GO:0016491
Vvi5g0093 593 SUPERFAMILY ALDH-like 58 525 IPR016161 GO:0016491
Vvi5g0093 593 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 301 496 IPR016163 GO:0016620
Vvi5g0093 593 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 59 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0093 Vvi-Chr5 817574 826343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0093 1 592 Aldehyde Dehydrogenase Gene Family AT3G66658 81.711 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0093 - - vvi:100249882 1197.19