Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0089 ATGGTTGACAACATTCATGAGAACAAGGTCCTAATAAGGGAATTCAATGAAGAAACAGACATTGAAGCAGTGGAGAAGCTTGAGAAGAACTGTGAGATAGGGTATAAAAAGGGGATCTCCATATTTACTAGCATGATGGGTGACCCTTTATGTAGAATTAGGCTCTACCCTGTTCATGTTATGCTGGTTGCTCAGCTGCTCGAAAATGGGGAGCTTGTCGGTGCAGTTCGAGGATGTATCAAGCGTGTGGGGACTGGTTTTGGGGGAACAGATGTGACGATGGGATGCATCCTGGGCCTTCGAGTCTCTCCTAGGCACAGGAGGATGGGCATTGGATTAGGGCTTGTTAAATCAGCAGAGGAATGGATAGAGAGAAATGGAGCACAGTATGCTTTCCTAGCAACCGAGGAGAACAATGTGGCCTCCACCAATCTCTTCACTCTCAAATGCAACTATGTAAAGTTTAGCTCATTAGTCATATATGTTCAACCAGTTAATGATCACCTTGCTGAGGAAGTAGATATTCCCAGAGACATAAAAATCGAGAAGTTGCATATCGAGCAGGCCATTTTCCTCTACAAGAACAGCTTGAAACAAAGAGAGATATACCCAACAGATATTGAGGCCATCTTGAAGGAGAAGCTGAGTATGGGCACCTGGGTGTGTTTCTTCAGAGAGGAAGGATGGGTAGGTTTGCAGAAGAAAGAAGAAAAAGAAGGGGAAATCATGGGTACAGCTCCAAGCTCTTGGGCAATCTTCAGCATATGGAATACCTCTGAGGCATACAAGCTTCAAATAAGGAGGTCAAATCTATTGAAAATATTCCATGCAAGTGTGAGCCATGCAATGGAGAGAATCCTGCCATGCCTGAAACTGCCATTCATGAGTATGAGTACTGAGTCCCATAAAAAACCCTTTGGGTTTCTGTTCCTGTATGGGATTCATGGAGAAGGAGAGAGGGTTGGGGAGCTGATGAAAGGAGTATGGAGGTTTGCGTCAAGAATGGCTGAGAATGTGAAGGACTGCAGTGTGATGATGACTGAGCTAGGAGGGTCTGATCCTCTCAGAGCCCATGTTCCTCAGGGCTCCTCCATGTCATGCATCAATGATCTCTGGTACTTAAAGAGGCTGAACGCCCCCGTGAGTGATGAGGATGAATTGACAGCGATGAGACCTGTGGGGAATGTGTTTGTTGATCCAAGAGATTTTTAG 1212 0.453 MVDNIHENKVLIREFNEETDIEAVEKLEKNCEIGYKKGISIFTSMMGDPLCRIRLYPVHVMLVAQLLENGELVGAVRGCIKRVGTGFGGTDVTMGCILGLRVSPRHRRMGIGLGLVKSAEEWIERNGAQYAFLATEENNVASTNLFTLKCNYVKFSSLVIYVQPVNDHLAEEVDIPRDIKIEKLHIEQAIFLYKNSLKQREIYPTDIEAILKEKLSMGTWVCFFREEGWVGLQKKEEKEGEIMGTAPSSWAIFSIWNTSEAYKLQIRRSNLLKIFHASVSHAMERILPCLKLPFMSMSTESHKKPFGFLFLYGIHGEGERVGELMKGVWRFASRMAENVKDCSVMMTELGGSDPLRAHVPQGSSMSCINDLWYLKRLNAPVSDEDELTAMRPVGNVFVDPRDF* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0089 403 Pfam Acetyltransferase (GNAT) family 64 151 IPR000182 GO:0016747
Vvi5g0089 403 Gene3D - 2 174 - -
Vvi5g0089 403 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 10 176 IPR000182 GO:0016747
Vvi5g0089 403 CDD NAT_SF 66 133 - -
Vvi5g0089 403 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 8 157 IPR016181 -
Vvi5g0089 403 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 5 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0089 Vvi-Chr5 790625 792303 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vvi5g0089 Acetyltransf_1 1.4e-13 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0089 - - vvi:100241472 818.15