Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0084 ATGAATCTTGATTCCCATGTGTTGTTTTGTCTCGTTTTCTTCTCTTTCGTCGTCAACCCCGTTCATGTACTGAGCGGCAGCTCTGAATCGGACTCTGTTTCGTTTATCTTGAGTTGTGGGGATTCCAGCGGTGGCGCTGATGCTGATGGGCGGAAGTGGGTTCCGGACACTAAGTTTCTGGCCTCCCCAGGGAAATCCATTTCGGCCACAGCACAACTCCAAGACCCTTCGCTGCCTTCTCCCGTTCCTTACATGTCTGCTAGGATTTTCACATCAGAATCCACCTACCAATTCTCAGTTTCTCCTAAGAATCGCCTCTGGGTCAGACTCCATTTTTACCCATCTTTTTACAGTGCTCTCAATGCTTCCGACAGCTTTTTCTCGGTCACTGCCGGTGGCTTCACCCTCCTTAACAATTTCAGTGCCTCCACCACAGCCCAAGCTCTCACACAGGCTTATATCATCAAAGACTTCTCTCTCATGCCCCCGGAATCTGGCCATCTCAATATCACATTCAAGCCTTCTCCAAATCACAATGGATCGTATGCTTTTATCAATGGGATTGAAGTAATTTCCATGCCGGATATATTTGGATCCGCAACTATGGTTGGGTACTCCGACTTGGATGCTGCCGGCTCTTCATTGCAGACCATGTATCGGTTGAATGTTGGTGGACAGTACATTGCAGCCAATAATGACTCTGGGCTAAGCCGGACATGGTATGATGATTCCCCATATCTGTATGGGGCTGCCTTTGGGGTCACTTCTGAAGCTGATAGCAATGTTACCATTCAATATCCTTCGCATGTGCCTGAGTATATTGCCCCAGTTGATGTGTACAGAACAGCAAGAACAATGGGTCCAGACCCAAAGATCAATCAGAATTATAATCTGACATGGGTGTTTCAGGTTGATGCCAATTTCACATACATTGTCAGGTTTCATTTCTGTGAGTTTCTGCTTTCCAAGATCAACCAGAGGGTGTTTGATATTTATGTTAACAACCAAACAGCACAGCCAGCTGCTGATTTGATTGCTTGGGCTGAATCAGAGGGAGTGCCGGTTTACAAGGATTTTGCTGTATTTGTTAAAGATGAACCTGGTGATGAACAACTATGGGTGGCATTACACCCATCTGTATCAATGAAGCCTGAATTCTATGATGCAATTCTCAATGGATTGGAGATCTTTAAGCTTAACGACTCAAATGGGAATTTAGCAGGTCCAAATCCTGTGCCATCACCCATGCTGGTTAAGGCTGAGGAGACGAGGAATTTCGCCTCACCAGAGTCTAGTGACAATGCTCAAGTCATAGGTGGGATTGCTGGAGGAGCTGCAGGGTTGGTGGTGGTTGTTGCAGTTGTTGCTGTTATAGCTTTCCGAAGGAAGAAAATGCTTGACAGAAGTGGTTCCAGGACAAGTGGGTGGTTGCCAGTTCATGGCAGCTCTGGCACAACAGCAAGCAAGTCTACTATCTCAGGCAAGAGCACTGCCAGTAGCCACTTGTCTTCCATGGCGGCAGCTCTTTGTCGGCATTTCACGTTGGCAGAAATGAGGCATGGCACCAAGAACTTTGACGAGTCACAGGTAATTGGGGTTGGAGGATTTGGGAAGGTTTATAAAGGGGTTGTGGATGGGAGCACAAAAGTTGCAATTAAAAGATCAAACCCTTCTTCAGAGCAAGGTGTTCATGAGTTCCAGACTGAAATTGAGATGCTTTCAAAGCTGAGACATAGGCATTTAGTCTCTCTTATTGGTTATTGTGAAGAAGATAATGAGATGATTCTGGTTTATGATTACATGGCCAATGGGACTCTGAGGGAGCATCTTTATAAGAGCGATAAACCTCAATTGTCATGGAAGCAGAGGTTGGAAATTTGTATTGGAGCTGCCAGGGGACTTCACTATCTTCACACTGGGGCCAAGTACACTATCATTCACAGGGATGTGAAGACTACGAACATTCTTCTGGATGAGAAGTGGGTAGCAAAAGTTTCAGATTTTGGGCTCTCAAAAACAGGCCCTGAACTCAATCAAACTCATGTTAGTACAGTGGTTAAGGGCAGCTTTGGGTACTTGGATCCTGAGTACTTCCGGAGACAACAATTGACAGAAAAATCTGATGTTTACTCCTTTGGGGTAGTACTTTTTGAGGCATTGTGTGCAAGGCCAGCCCTCAATCCCAGCCTTCCTAAGGAACAAGTTAGTCTTGCAGATTGGGCGCTACAATGCCAAAAGAAGGGAATTCTCGAGGAAATCATCGATCCCCATCTTAAGGGAAATATCACTCCTGAGTGCTTGATGAAATTTGCAGAGACTGCCGAGAAGTGCCTGTCTGATCATGGCCTTGAGCGACCTTCAATGGGCGACGTACTCTGGAACCTTGAGTTTGCCCTCCAATTGCAGGAGAAACCCCAAGGAGCAAAAATTGATGTAGAGAAGGTGAATGCCGACATCAATGCAATGCATAGAAGCATGTTGAGCATTGATGAGGAGAGTGCAGTTAGTGAGGATACTGAGGACTTAAGCACAAGTGAAGTGTTCTCACACATGGTGAACCCAAAAGGGAGATGA 2574 0.4588 MNLDSHVLFCLVFFSFVVNPVHVLSGSSESDSVSFILSCGDSSGGADADGRKWVPDTKFLASPGKSISATAQLQDPSLPSPVPYMSARIFTSESTYQFSVSPKNRLWVRLHFYPSFYSALNASDSFFSVTAGGFTLLNNFSASTTAQALTQAYIIKDFSLMPPESGHLNITFKPSPNHNGSYAFINGIEVISMPDIFGSATMVGYSDLDAAGSSLQTMYRLNVGGQYIAANNDSGLSRTWYDDSPYLYGAAFGVTSEADSNVTIQYPSHVPEYIAPVDVYRTARTMGPDPKINQNYNLTWVFQVDANFTYIVRFHFCEFLLSKINQRVFDIYVNNQTAQPAADLIAWAESEGVPVYKDFAVFVKDEPGDEQLWVALHPSVSMKPEFYDAILNGLEIFKLNDSNGNLAGPNPVPSPMLVKAEETRNFASPESSDNAQVIGGIAGGAAGLVVVVAVVAVIAFRRKKMLDRSGSRTSGWLPVHGSSGTTASKSTISGKSTASSHLSSMAAALCRHFTLAEMRHGTKNFDESQVIGVGGFGKVYKGVVDGSTKVAIKRSNPSSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEDNEMILVYDYMANGTLREHLYKSDKPQLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPELNQTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPSLPKEQVSLADWALQCQKKGILEEIIDPHLKGNITPECLMKFAETAEKCLSDHGLERPSMGDVLWNLEFALQLQEKPQGAKIDVEKVNADINAMHRSMLSIDEESAVSEDTEDLSTSEVFSHMVNPKGR* 858
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0084 857 SUPERFAMILY Protein kinase-like (PK-like) 499 798 IPR011009 -
Vvi5g0084 857 SMART serkin_6 525 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0084 857 CDD STKc_IRAK 531 796 - -
Vvi5g0084 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Vvi5g0084 857 FunFam FERONIA receptor-like kinase 34 194 - -
Vvi5g0084 857 FunFam FERONIA receptor-like kinase 213 400 - -
Vvi5g0084 857 FunFam Receptor-like protein kinase FERONIA 601 814 - -
Vvi5g0084 857 Pfam Malectin-like domain 37 398 IPR024788 -
Vvi5g0084 857 Gene3D Transferase(Phosphotransferase) domain 1 601 821 - -
Vvi5g0084 857 Pfam Protein tyrosine and serine/threonine kinase 528 792 IPR001245 GO:0004672|GO:0006468
Vvi5g0084 857 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Vvi5g0084 857 PANTHER OS03G0124300 PROTEIN-RELATED 9 465 IPR046957 GO:0004672
Vvi5g0084 857 MobiDBLite consensus disorder prediction 475 495 - -
Vvi5g0084 857 Gene3D - 30 193 - -
Vvi5g0084 857 Gene3D - 214 400 - -
Vvi5g0084 857 ProSiteProfiles Protein kinase domain profile. 525 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0084 857 Gene3D Phosphorylase Kinase; domain 1 484 600 - -
Vvi5g0084 857 FunFam receptor-like protein kinase FERONIA 487 600 - -
Vvi5g0084 857 MobiDBLite consensus disorder prediction 471 495 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi5g0084 Vvi-Chr5 749324 751897 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0084 18 857 Receptor kinase-like Gene Family AT3G51550 57.705 0.0 979
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi5g0084 Malectin_like 5.4e-41 CL0202
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0084 - - vvi:100260108 1628.22