LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g0084	ATGAATCTTGATTCCCATGTGTTGTTTTGTCTCGTTTTCTTCTCTTTCGTCGTCAACCCCGTTCATGTACTGAGCGGCAGCTCTGAATCGGACTCTGTTTCGTTTATCTTGAGTTGTGGGGATTCCAGCGGTGGCGCTGATGCTGATGGGCGGAAGTGGGTTCCGGACACTAAGTTTCTGGCCTCCCCAGGGAAATCCATTTCGGCCACAGCACAACTCCAAGACCCTTCGCTGCCTTCTCCCGTTCCTTACATGTCTGCTAGGATTTTCACATCAGAATCCACCTACCAATTCTCAGTTTCTCCTAAGAATCGCCTCTGGGTCAGACTCCATTTTTACCCATCTTTTTACAGTGCTCTCAATGCTTCCGACAGCTTTTTCTCGGTCACTGCCGGTGGCTTCACCCTCCTTAACAATTTCAGTGCCTCCACCACAGCCCAAGCTCTCACACAGGCTTATATCATCAAAGACTTCTCTCTCATGCCCCCGGAATCTGGCCATCTCAATATCACATTCAAGCCTTCTCCAAATCACAATGGATCGTATGCTTTTATCAATGGGATTGAAGTAATTTCCATGCCGGATATATTTGGATCCGCAACTATGGTTGGGTACTCCGACTTGGATGCTGCCGGCTCTTCATTGCAGACCATGTATCGGTTGAATGTTGGTGGACAGTACATTGCAGCCAATAATGACTCTGGGCTAAGCCGGACATGGTATGATGATTCCCCATATCTGTATGGGGCTGCCTTTGGGGTCACTTCTGAAGCTGATAGCAATGTTACCATTCAATATCCTTCGCATGTGCCTGAGTATATTGCCCCAGTTGATGTGTACAGAACAGCAAGAACAATGGGTCCAGACCCAAAGATCAATCAGAATTATAATCTGACATGGGTGTTTCAGGTTGATGCCAATTTCACATACATTGTCAGGTTTCATTTCTGTGAGTTTCTGCTTTCCAAGATCAACCAGAGGGTGTTTGATATTTATGTTAACAACCAAACAGCACAGCCAGCTGCTGATTTGATTGCTTGGGCTGAATCAGAGGGAGTGCCGGTTTACAAGGATTTTGCTGTATTTGTTAAAGATGAACCTGGTGATGAACAACTATGGGTGGCATTACACCCATCTGTATCAATGAAGCCTGAATTCTATGATGCAATTCTCAATGGATTGGAGATCTTTAAGCTTAACGACTCAAATGGGAATTTAGCAGGTCCAAATCCTGTGCCATCACCCATGCTGGTTAAGGCTGAGGAGACGAGGAATTTCGCCTCACCAGAGTCTAGTGACAATGCTCAAGTCATAGGTGGGATTGCTGGAGGAGCTGCAGGGTTGGTGGTGGTTGTTGCAGTTGTTGCTGTTATAGCTTTCCGAAGGAAGAAAATGCTTGACAGAAGTGGTTCCAGGACAAGTGGGTGGTTGCCAGTTCATGGCAGCTCTGGCACAACAGCAAGCAAGTCTACTATCTCAGGCAAGAGCACTGCCAGTAGCCACTTGTCTTCCATGGCGGCAGCTCTTTGTCGGCATTTCACGTTGGCAGAAATGAGGCATGGCACCAAGAACTTTGACGAGTCACAGGTAATTGGGGTTGGAGGATTTGGGAAGGTTTATAAAGGGGTTGTGGATGGGAGCACAAAAGTTGCAATTAAAAGATCAAACCCTTCTTCAGAGCAAGGTGTTCATGAGTTCCAGACTGAAATTGAGATGCTTTCAAAGCTGAGACATAGGCATTTAGTCTCTCTTATTGGTTATTGTGAAGAAGATAATGAGATGATTCTGGTTTATGATTACATGGCCAATGGGACTCTGAGGGAGCATCTTTATAAGAGCGATAAACCTCAATTGTCATGGAAGCAGAGGTTGGAAATTTGTATTGGAGCTGCCAGGGGACTTCACTATCTTCACACTGGGGCCAAGTACACTATCATTCACAGGGATGTGAAGACTACGAACATTCTTCTGGATGAGAAGTGGGTAGCAAAAGTTTCAGATTTTGGGCTCTCAAAAACAGGCCCTGAACTCAATCAAACTCATGTTAGTACAGTGGTTAAGGGCAGCTTTGGGTACTTGGATCCTGAGTACTTCCGGAGACAACAATTGACAGAAAAATCTGATGTTTACTCCTTTGGGGTAGTACTTTTTGAGGCATTGTGTGCAAGGCCAGCCCTCAATCCCAGCCTTCCTAAGGAACAAGTTAGTCTTGCAGATTGGGCGCTACAATGCCAAAAGAAGGGAATTCTCGAGGAAATCATCGATCCCCATCTTAAGGGAAATATCACTCCTGAGTGCTTGATGAAATTTGCAGAGACTGCCGAGAAGTGCCTGTCTGATCATGGCCTTGAGCGACCTTCAATGGGCGACGTACTCTGGAACCTTGAGTTTGCCCTCCAATTGCAGGAGAAACCCCAAGGAGCAAAAATTGATGTAGAGAAGGTGAATGCCGACATCAATGCAATGCATAGAAGCATGTTGAGCATTGATGAGGAGAGTGCAGTTAGTGAGGATACTGAGGACTTAAGCACAAGTGAAGTGTTCTCACACATGGTGAACCCAAAAGGGAGATGA	2574	0.4588	MNLDSHVLFCLVFFSFVVNPVHVLSGSSESDSVSFILSCGDSSGGADADGRKWVPDTKFLASPGKSISATAQLQDPSLPSPVPYMSARIFTSESTYQFSVSPKNRLWVRLHFYPSFYSALNASDSFFSVTAGGFTLLNNFSASTTAQALTQAYIIKDFSLMPPESGHLNITFKPSPNHNGSYAFINGIEVISMPDIFGSATMVGYSDLDAAGSSLQTMYRLNVGGQYIAANNDSGLSRTWYDDSPYLYGAAFGVTSEADSNVTIQYPSHVPEYIAPVDVYRTARTMGPDPKINQNYNLTWVFQVDANFTYIVRFHFCEFLLSKINQRVFDIYVNNQTAQPAADLIAWAESEGVPVYKDFAVFVKDEPGDEQLWVALHPSVSMKPEFYDAILNGLEIFKLNDSNGNLAGPNPVPSPMLVKAEETRNFASPESSDNAQVIGGIAGGAAGLVVVVAVVAVIAFRRKKMLDRSGSRTSGWLPVHGSSGTTASKSTISGKSTASSHLSSMAAALCRHFTLAEMRHGTKNFDESQVIGVGGFGKVYKGVVDGSTKVAIKRSNPSSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEDNEMILVYDYMANGTLREHLYKSDKPQLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPELNQTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPSLPKEQVSLADWALQCQKKGILEEIIDPHLKGNITPECLMKFAETAEKCLSDHGLERPSMGDVLWNLEFALQLQEKPQGAKIDVEKVNADINAMHRSMLSIDEESAVSEDTEDLSTSEVFSHMVNPKGR*	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g0084	857	SUPERFAMILY	Protein kinase-like (PK-like)	499	798	IPR011009	-
	Vvi5g0084	857	SMART	serkin_6	525	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0084	857	CDD	STKc_IRAK	531	796	-	-
	Vvi5g0084	857	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	645	657	IPR008271	GO:0004672\|GO:0006468
	Vvi5g0084	857	FunFam	FERONIA receptor-like kinase	34	194	-	-
	Vvi5g0084	857	FunFam	FERONIA receptor-like kinase	213	400	-	-
	Vvi5g0084	857	FunFam	Receptor-like protein kinase FERONIA	601	814	-	-
	Vvi5g0084	857	Pfam	Malectin-like domain	37	398	IPR024788	-
	Vvi5g0084	857	Gene3D	Transferase(Phosphotransferase) domain 1	601	821	-	-
	Vvi5g0084	857	Pfam	Protein tyrosine and serine/threonine kinase	528	792	IPR001245	GO:0004672\|GO:0006468
	Vvi5g0084	857	ProSitePatterns	Protein kinases ATP-binding region signature.	531	553	IPR017441	GO:0005524
	Vvi5g0084	857	PANTHER	OS03G0124300 PROTEIN-RELATED	9	465	IPR046957	GO:0004672
	Vvi5g0084	857	MobiDBLite	consensus disorder prediction	475	495	-	-
	Vvi5g0084	857	Gene3D	-	30	193	-	-
	Vvi5g0084	857	Gene3D	-	214	400	-	-
	Vvi5g0084	857	ProSiteProfiles	Protein kinase domain profile.	525	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0084	857	Gene3D	Phosphorylase Kinase; domain 1	484	600	-	-
	Vvi5g0084	857	FunFam	receptor-like protein kinase FERONIA	487	600	-	-
	Vvi5g0084	857	MobiDBLite	consensus disorder prediction	471	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g0084	Vvi-Chr5	749324	751897	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g0084	18	857	Receptor kinase-like Gene Family	AT3G51550	57.705	0.0	979

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vvi5g0084		Malectin_like	5.4e-41	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g0084	-		-	vvi:100260108	1628.22