Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0081 ATGAGTTCAGGAAACAGAGGAACGCAGTCGCACCACCAAGCTCAGTCGTCGGGGACAAGCAATTTGAGAGTTTACCACACTGATTCAATGAGCAAAGCCATTGCGCAGTATACAATGGATGCTCGCCTCCACGCCGTATACGAACAGTCCGGCGAGTCCGGTAAGTCATTCGACTACTCGCAGTCGGTTAGAACCACAACGCAATCGGTCCCTGAGCAACAAATCACTGCGTATTTATCGAAAATTCAACGGGGTGGCCATATACAGCCCTTTGGGTGTATGCTTGCGGTCGATGAGGCCACTTTTCGGGTCATTGCTTTCAGCGAAAATGCCCGAGAAATGCTCGGTCTCACTCCGCAATCGGTTCCGAGCCTTGAGAAGCCCGAGATCCTCCTAGTAGGTACTGATGTTCGCACGCTTTTCACTCCCTCGAGCGCAGTTCTCCTCGAAAAGGCGTTTGGGGCTCGGGAAATTACGTTGTTAAATCCCGTGTGGATTCATTCCAAGAATTCTGGAAAACCCTTTTACGCAATTTTGCATAGAATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCAAGGACTGAGGACCCTGCTCTGTCTATTGCTGGGGCGGTGCAGTCGCAGAAGTTGGCCGTTCGAGCAATTTCCCATCTTCAATCTCTTCCCGGTGGTGATATTAACCTTTTGTGTGAAACTGTGGTTGAGAATGTGAGGGAGCTTACTGGGTATGATCGGGTCATGGTTTACAAATTTCACGAGGATGAACATGGTGAGGTCGTGGCTGAGAGCAAGAGGTCTGATTTGGAGCCTTATATTGGGTTACACTATCCTGCCACGGACATTCCACAGGCTTCAAGGTTTTTGTTTAGGCAGAATCGGGTTAGGATGATCGTTGATTGCCATGCCACGCCTGTTCTGGTGATTCAAGATGAAGGGCTTATGCAGCCTCTATGCTTAGTTGGTTCAACCCTTCGGGCTCCTCATGGCTGCCATGCACAGTATATGGCCAACATGGGTTCAACTGCCTCATTAGCGATGGCTGTCATCATCAATGGAAATGATGAGGAAGCTATTGGTGGGCGAAACTTGATGAGGCTATGGGGCCTGGTTGTTTGCCATCACACATCTGCTAGGTGCATTCCATTTCCTCTTCGATATGCCTGTGAGTTCCTAATGCAGGCATTTGGACTCCAATTGAACATGGAACTGCAGTTAGCATCGCAATTGTCTGAGAAACATGTTTTAAGGACCCAGACTCTCTTGTGTGACATGCTCCTTCGTGATTCCCCTACTGGAATTGTTACCCAAAGTCCTAGTATTATGGATCTTGTGAAGTGTGATGGAGCAGCACTTTATTGCCAGGGGAAGTATTATCCAACTGGGGTGACCCCGACTGAAGCCCAGATAAAGGATATTGCAGAGTGGTTGTTGGCAAACCATGCGGATTCAACAGGTTTAAGCACTGACAGTTTGGCTGATGCTGGCTACCCTGGGGCAGCCTCACTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTATATCACTTCAAGAGATTTTCTATTCTGGTTTCGGTCCCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCAGAGGACAAGGACGATGGGCAGAGGATGCATCCTCGTTCTTCATTCAAGGCATTTTTAGAAGTGGTCAAGAGTCGGAGTTTGCCATGGGAGAATGCGGAAATGGATGCAATTCATTCTCTGCAGCTTATTCTGCGTGACTCTTTTAAGGATGCTACTGATGGAAGCAATTCTAAGGCTGTAATGCATGCTCAGCTCGGGGAGCTAGAGTTGCAAGGGATGGATGAGTTGAGCTCTGTTGCAAGAGAAATGGTTAGGTTGATTGAAACTGCAACAGCTCCCATATTTGCGGTCGATGTTGATGGCTGCATAAATGGTTGGAATGCAAAGGTTGCGGAGTTGACGGGGCTTTCTGTTGAGGAAGCTATGGGGAAGTCCTTGGTTCATGATCTTGTTTACAAGGAATCTGAAGAAACTGTTGACAAGCTTCTTCATCATGCTCTACAAGGTGAAGAAGATAAGAATGTAGAGATAAAATTGAGGACATTTGACTCACAACAGCATAAGAAGGCTGTTTTTGTGGTCGTTAATGCTTGCTCCAGTAGGGATTACACAAATAATATAGTTGGAGTTTGCTTTGTTGGTCAGGATGTTACTGGTCAGAAAGTGGTAATGGACAAATTTATCCATATACAAGGTGATTACAAAGCTATTGTACATAGTCCCAACCCTTTGATTCCTCCTATATTTGCTTCAGATGAGAACACAGTTTGCTCTGAGTGGAACACTGCCATGGAAAAGCTCACTGGGTGGAGCAGGGGGGACATCATTGGGAAGATGTTGGTTGGGGAGATTTTTGGCAGTAGCTGTCGGCTGAAGGGTCCGGATGCTCTGACAAAATTCATGATTGTGTTGCACAATGCAATTGGAGGGCAAGACACAGACAAGTTTCCATTTTCCTTCTTTGACCAGAATGGAAAATATGTGCAAGCTCTTTTGACGGCAAATAAGAGAGTTAATATTGAGGGCCAGATTATTGGTGCCTTCTGCTTTTTGCAGATTGCAAGTCCTGAATTGCAGCAAGCTCTCAAAGTCCAAAGGCAACAGGAGAAAAAATGCTTTGCAAGGATGAAAGAGTTGGCTTACATTTGTCAGGAAATAAAGAACCCTTTAAGTGGCATACGTTTCACTAACTCTCTTTTGGAGGCCACTGACTTAACTGAAGATCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAGATGTCAAAGATCATAAGGGATGTTGATCTGGACAGCATTGAGGATGGTTCACTGGAGCTTGAGAGGGCTGAATTTTTACTTGGAAGTGTCATAAATGCTGTTGTTAGCCAAGTAATGATATTGTTGAGGGAAAGAGATTTACAATTGATCCGGGACATTCCTGAGGAAGTCAAAACACTGGCTGTTTATGGTGATCAAGTAAGAATTCAACAGGTTTTGGCTGATTTCTTACTGAATATGGTGCGTTATGCACCATCCCCAGACGGTTGGATAGAGATTCAAGTTCATCCAAGATTGAAGCAAATTTCTGAAGAAGTAAAACTTATGCATATTGAATTCAGGATGGTATGCCCTGGTGAAGGTCTTCCTCCTAATCTGATTCAAGACATGTTCCATAGCAGTCGTTGGATGACTCAGGAAGGTCTAGGGCTGAGCATGTGCAGGAAGATCTTAAAGCTCATTAATGGCGAAGTCCAATATATCAGAGAATCAGAAAGATGTTATTTTCTAATCAGCATAGAACTTCCTGTACCTCGCAGAGGCTCAAAGAGCGTTGACTAG 3390 0.4534 MSSGNRGTQSHHQAQSSGTSNLRVYHTDSMSKAIAQYTMDARLHAVYEQSGESGKSFDYSQSVRTTTQSVPEQQITAYLSKIQRGGHIQPFGCMLAVDEATFRVIAFSENAREMLGLTPQSVPSLEKPEILLVGTDVRTLFTPSSAVLLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDINLLCETVVENVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFRQNRVRMIVDCHATPVLVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSTASLAMAVIINGNDEEAIGGRNLMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYCQGKYYPTGVTPTEAQIKDIAEWLLANHADSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDATDGSNSKAVMHAQLGELELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTGLSVEEAMGKSLVHDLVYKESEETVDKLLHHALQGEEDKNVEIKLRTFDSQQHKKAVFVVVNACSSRDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTVCSEWNTAMEKLTGWSRGDIIGKMLVGEIFGSSCRLKGPDALTKFMIVLHNAIGGQDTDKFPFSFFDQNGKYVQALLTANKRVNIEGQIIGAFCFLQIASPELQQALKVQRQQEKKCFARMKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQMSKIIRDVDLDSIEDGSLELERAEFLLGSVINAVVSQVMILLRERDLQLIRDIPEEVKTLAVYGDQVRIQQVLADFLLNMVRYAPSPDGWIEIQVHPRLKQISEEVKLMHIEFRMVCPGEGLPPNLIQDMFHSSRWMTQEGLGLSMCRKILKLINGEVQYIRESERCYFLISIELPVPRRGSKSVD* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0081 1129 CDD PAS 765 873 IPR000014 -
Vvi5g0081 1129 SMART HKATPase_4 1007 1122 IPR003594 -
Vvi5g0081 1129 NCBIfam PAS domain S-box protein 627 742 IPR000014 -
Vvi5g0081 1129 SMART HisKA_10 895 959 IPR003661 GO:0000155|GO:0007165
Vvi5g0081 1129 Pfam Phytochrome region 417 591 IPR013515 GO:0006355|GO:0009584
Vvi5g0081 1129 PIRSF Phytochrome_conventional 8 1127 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vvi5g0081 1129 SUPERFAMILY GAF domain-like 412 590 - -
Vvi5g0081 1129 Gene3D - 958 1123 IPR036890 -
Vvi5g0081 1129 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 642 657 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 519 538 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 552 570 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 623 639 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 716 733 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 PRINTS Phytochrome signature 736 756 IPR001294 GO:0006355|GO:0009584
Vvi5g0081 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 768 871 IPR035965 -
Vvi5g0081 1129 FunFam Phytochrome 616 748 - -
Vvi5g0081 1129 ProSiteProfiles PAS repeat profile. 620 691 IPR000014 -
Vvi5g0081 1129 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 951 IPR036097 GO:0000155|GO:0007165
Vvi5g0081 1129 Gene3D PAS domain 767 875 - -
Vvi5g0081 1129 Gene3D - 409 582 IPR043150 -
Vvi5g0081 1129 FunFam Phytochrome 767 875 - -
Vvi5g0081 1129 SMART pas_2 622 689 IPR000014 -
Vvi5g0081 1129 SMART pas_2 753 823 IPR000014 -
Vvi5g0081 1129 MobiDBLite consensus disorder prediction 1 23 - -
Vvi5g0081 1129 Pfam PAS fold 754 873 IPR013767 GO:0006355
Vvi5g0081 1129 Pfam PAS fold 623 738 IPR013767 GO:0006355
Vvi5g0081 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 394 IPR016132 -
Vvi5g0081 1129 Pfam PAS fold 77 193 IPR013654 GO:0006355
Vvi5g0081 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 970 1119 IPR036890 -
Vvi5g0081 1129 Gene3D - 876 957 - -
Vvi5g0081 1129 Pfam His Kinase A (phospho-acceptor) domain 899 959 IPR003661 GO:0000155|GO:0007165
Vvi5g0081 1129 Gene3D - 207 565 IPR029016 -
Vvi5g0081 1129 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1113 IPR003594 -
Vvi5g0081 1129 CDD PAS 631 738 IPR000014 -
Vvi5g0081 1129 ProSiteProfiles PAS repeat profile. 754 806 IPR000014 -
Vvi5g0081 1129 FunFam Phytochrome 409 539 - -
Vvi5g0081 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 735 IPR035965 -
Vvi5g0081 1129 SUPERFAMILY GAF domain-like 206 401 - -
Vvi5g0081 1129 CDD HisKA 895 955 IPR003661 GO:0000155|GO:0007165
Vvi5g0081 1129 FunFam Phytochrome 958 1124 - -
Vvi5g0081 1129 CDD HATPase_Phy-like 1006 1118 IPR044767 -
Vvi5g0081 1129 Pfam GAF domain 226 404 IPR003018 GO:0005515
Vvi5g0081 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Vvi5g0081 1129 Gene3D PAS domain 618 742 - -
Vvi5g0081 1129 ProSiteProfiles Histidine kinase domain profile. 902 1122 IPR005467 -
Vvi5g0081 1129 Gene3D PAS domain 81 329 - -
Vvi5g0081 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Vvi5g0081 1129 PANTHER OS08G0260000 PROTEIN 72 957 - -
Vvi5g0081 1129 SMART gaf_1 226 414 IPR003018 GO:0005515
Vvi5g0081 1129 FunFam Phytochrome 876 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0081 Vvi-Chr5 711344 718860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0081 5 1121 Histidine Kinase Gene Family AT4G16250 75.462 0.0 1793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0081 K12121 - vvi:100261882 2249.17