Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0080 ATGGACACGCCTCCAGCTGAAGAGCTGCTGAGGAAGATCCAAGAGCTGGAAGCGGGTCATGCGCATCTCAAGGAAGAGATGTCGAAGCTGATGGTTTCTGGACCCAAATCGGACCATGGGCATCAGAGGTCGCACTCGACATCGCCACAGAGGTCGAGGTTTTCGTCGCCGGCGACATCGTCATGGAGAAAGGGAAGCGGTGGGTTCGACGGACCGGCGGGGTGGAGGAGGGGGTCGGCGTCGTTCCGGCATTCGTCGCCGTTGCAGAGGGAGAGCCGAAGTCGTGATCCTTCAAGCACTGCCGGCGGTGGTGGTGGCCCGGCGGCTTACAAATTTAATGATAAGCAGTATTCGAATATTTTGCAGAGCATGGGGCAGTCAATTCATATATTTGATCTCAATGGTCGCGTAATCTATTGGAATAGAACTGCTGAAAAACTTTATGGTTATTCAGCTGAAGAAGCCCTCGGTCAGCAGGCCATTGAGCTCCTATCGGATGTCCAGGACTACGCTATTGCTAATAATATAGTGGATCGAGTATCAAGGGGGGAGAGCTGGACTGGGCAGTTCCCTGTGAAGAATAAGATGGGGGAGAGGTTTCTAGCCGTTGCTACCAACACTCCATTCTATGATGATGATGGTACATTAATTGGGATTATTTGCGTATCTAGTGATTCGCAGCCCTTTCAAGAAATAAGAGTTGCAATGTCCAATGAGAGGCAATCAGAAGCTAATGCGAGCTATAATCGTTCCCGAAGCAGTAGTGCTTCGGCAAAGCTTGGTCTTGATCCTCAGCAGCCTATTCAAGCTGCAATTGCCTCCAAAATATCAAATTTGGCTTCCAAGGTGAGCAACAAAGTTCGGAAAATTAAGGCTGGGGAGAACAATGTGGTTCGCGAGGGTGGGAGTGGAGATAGTCATCATTCTGATCATGGTTTCTCAGATGCAGCTTTCTCTGACCATAGGGAGGATGCAACTTCAAGTGGAGCTAGCACCCCCAGAGGAGATGTGGCACCATCTCCTTTTGGCATATTTTCTCAGGCAACTGCTGATGAGAAGTCCCCAGGAAAGAACTTAAGAGATTCTGGTGATGAGAATGAAGGGAAACCTGGGATCCACAGGGTTATTACCTCCAAGGCAGAGGCATGGATTGGCAAGAAAGTTATGTCATGGCCATGGAAAGGGAATGAACGGGAAGGGTCGGAGGTAAAGACAAACCGGTTTGGTTGGCCCTGGTTGCAGAATGATCATGAGAATGACATGGTCCAACCAAAGAATCCCAATTTTGGTGCAAAAACCGAAAACCTGGTGAGTGAAAGTAATCGGCACGGGAATAATGATGCTTCAGGGTCCTGGTCTTCATTTAATGTTAACAGCACGAGCAGTGTAAGTAGCTGTGGCAGTACCAGCAGTAGTGCTGTTAATAAAGTGGACATGGAAACTGACTGCTTGGATTATGAAATTTTGTGGGAAGACTTGACTATTGGAGAACAGATTGGGCAAGGATCTTGTGGAACCGTATATCATGGTCTTTGGTATGGATCAGATGTTGCTATCAAGGTGTTCTCCAAGCAGGAATATTCAGATGACGTGATACTTTCATTCAGACAAGAGGTATCTCTCATGAAAAGGCTTAGACATCCAAATGTTCTGCTCTTCATGGGTGCAGTAACTTCACCTCAGCGTCTATGCATTGTCACTGAGTTCCTTCCACGTGGAAGTTTATTTCGGTTACTCCAAAGGAACACATCCAGACTAGATTGGAGACGACGTGTACACATGGCTTTGGATATAGCACAAGGCATGAACTATCTTCATCATTTCAACCCACCTATCATCCATCGTGATTTGAAGTCTTCAAATCTTCTAGTTGATAGAAACTGGACTGTGAAGGTTGGTGATTTTGGTCTATCACGTCTCAAACATGAAACATATCTCACAACAAAGACTGGGAAAGGAACGCCTCAATGGATGGCTCCAGAGGTTCTCCGTAATGAACCCTCAGATGAGAAGTCTGATGTATATAGTTATGGAGTAATATTATGGGAGCTTGCCACTGAGAAGATCCCTTGGGATAATCTCAACACAATGCAGGTGATTGGAGCTGTTGGTTTTATGAACCAACGGCTTGACATACCAAAAGAAGTGGATTTACGATGGGCTTCTATAATTGAGAGTTGCTGGCACAGTGATCCCCGGAGTAGGCCAACATTCCAGGAATTGCTGGGAAAGTTCAAAGATATACTGAGACAGCAAACTATGCAATTTCAGGCAGCCCGTGCTGCAGCTGGAGATAACACCCAAAAGGAGTTGTAG 2316 0.4676 MDTPPAEELLRKIQELEAGHAHLKEEMSKLMVSGPKSDHGHQRSHSTSPQRSRFSSPATSSWRKGSGGFDGPAGWRRGSASFRHSSPLQRESRSRDPSSTAGGGGGPAAYKFNDKQYSNILQSMGQSIHIFDLNGRVIYWNRTAEKLYGYSAEEALGQQAIELLSDVQDYAIANNIVDRVSRGESWTGQFPVKNKMGERFLAVATNTPFYDDDGTLIGIICVSSDSQPFQEIRVAMSNERQSEANASYNRSRSSSASAKLGLDPQQPIQAAIASKISNLASKVSNKVRKIKAGENNVVREGGSGDSHHSDHGFSDAAFSDHREDATSSGASTPRGDVAPSPFGIFSQATADEKSPGKNLRDSGDENEGKPGIHRVITSKAEAWIGKKVMSWPWKGNEREGSEVKTNRFGWPWLQNDHENDMVQPKNPNFGAKTENLVSESNRHGNNDASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDMETDCLDYEILWEDLTIGEQIGQGSCGTVYHGLWYGSDVAIKVFSKQEYSDDVILSFRQEVSLMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSRLDWRRRVHMALDIAQGMNYLHHFNPPIIHRDLKSSNLLVDRNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSYGVILWELATEKIPWDNLNTMQVIGAVGFMNQRLDIPKEVDLRWASIIESCWHSDPRSRPTFQELLGKFKDILRQQTMQFQAARAAAGDNTQKEL* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0080 771 NCBIfam PAS domain S-box protein 114 225 IPR000014 -
Vvi5g0080 771 SMART serkin_6 493 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0080 771 Pfam PAS fold 116 223 IPR013767 GO:0006355
Vvi5g0080 771 Gene3D PAS domain 125 229 - -
Vvi5g0080 771 SMART pas_2 115 181 IPR000014 -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 47 63 - -
Vvi5g0080 771 SUPERFAMILY Protein kinase-like (PK-like) 478 742 IPR011009 -
Vvi5g0080 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vvi5g0080 771 FunFam PAS domain-containing protein tyrosine kinase family protein 571 762 - -
Vvi5g0080 771 ProSiteProfiles PAS repeat profile. 113 184 IPR000014 -
Vvi5g0080 771 SUPERFAMILY PYP-like sensor domain (PAS domain) 113 222 IPR035965 -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 19 45 - -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 354 373 - -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 291 322 - -
Vvi5g0080 771 Coils Coil 6 26 - -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 82 99 - -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 291 373 - -
Vvi5g0080 771 CDD PAS 124 225 IPR000014 -
Vvi5g0080 771 PRINTS Tyrosine kinase catalytic domain signature 672 694 IPR001245 GO:0004672|GO:0006468
Vvi5g0080 771 PRINTS Tyrosine kinase catalytic domain signature 567 580 IPR001245 GO:0004672|GO:0006468
Vvi5g0080 771 PRINTS Tyrosine kinase catalytic domain signature 606 624 IPR001245 GO:0004672|GO:0006468
Vvi5g0080 771 PRINTS Tyrosine kinase catalytic domain signature 716 738 IPR001245 GO:0004672|GO:0006468
Vvi5g0080 771 PRINTS Tyrosine kinase catalytic domain signature 653 663 IPR001245 GO:0004672|GO:0006468
Vvi5g0080 771 Pfam Protein tyrosine and serine/threonine kinase 493 743 IPR001245 GO:0004672|GO:0006468
Vvi5g0080 771 CDD STKc_MAP3K-like 499 742 - -
Vvi5g0080 771 ProSiteProfiles Protein kinase domain profile. 493 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0080 771 Gene3D Transferase(Phosphotransferase) domain 1 571 770 - -
Vvi5g0080 771 Gene3D Phosphorylase Kinase; domain 1 486 570 - -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 19 109 - -
Vvi5g0080 771 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 103 756 - -
Vvi5g0080 771 FunFam PAS domain-containing protein tyrosine kinase 486 570 - -
Vvi5g0080 771 MobiDBLite consensus disorder prediction 240 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0080 Vvi-Chr5 695212 701417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0080 1 767 MAP Kinase Kinase Kinase AT3G06620 63.185 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vvi5g0080 PK_Tyr_Ser-Thr 4.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0080 - - vvi:100256793 1502.26