Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0077 ATGTCTTCACCATTCCTTCAAGCCATTCACATTGCCTTTCTGGTCATTGTCTCCGTCTCCATCCCTGCATCCCATGCAGCACATAACAAATCCCCCAATCTCAATACAACAGTGTTAGATTCTCCTCTCTTGACGAAAAAGATTGGTGCCAACCACACGATCAAGGTCGATATCAATGGCAGAGGAGACTTCACTTCTGTTCAAGCTGCCATTGACTCTGTTCCTGAAGGGAATGGCAAGTGGACTATCATCCATATCAGAAAAGGGGTGTACAAAGAGAAGGTTCACATACCAGAGAACAAGCCTTATATCTTCCTGAGAGGAAATGGGAGAGGCAGGACTTCCATCGTTTGGTCCCAAAGCTCCAAGGACAACATAGAGTCTGCAACTTTCAAAGTTAAAGCCCCCCATGTTGTTATCTTTGGTATCAGCTTCAAGAATGATGCTCCGACCGGGGTCGCCCAGACCTCACAGAACCAGTCAGTGGCAGCATATGTGGGGGCGGAGATGGTAGCATTCTACCACTGCTCCTTCTACAGTACCCACAACACTCTCTTTGATTACAAAGGCAGGCACTTCTACCACAACTGCTACATCCAGGGCTCAGTTGATTTCATCTTTGGCCGCGGAAGATCCATCTTCCATAACTGTGAGATATTCGTGATTGCAGACCAAAGGGTGAAGATCTCAGGATCCATCACAGCTCAGAACAGGCAAAGTGGAGAAGATAACAGTGGGTTTGTGTTTGTGAAAGGGAAAGTGTATGGCATTGGAGGAGTATACTTGGGTAGAGCCAAAGGCTCCCATTCTAGAGCGGTTTTTGCGAAGGTTTATATGTCTAGGACAATAGTCCCGCAGGGCTGGACCAAATGGAGCTATACTGGCAGCACCGAGAACCTATTCCAAGCGGAGTACAAATGCTATGGACCAGGAGCAGAAACAGAGAACCGGGCTTCATGGTCTTTACAGCTCACTGATGAAGAAGCTGCTCCTTACCTCTCCGTGGACTTCGTGGATGGCCAGAAATGGCTACCGGCATGGCTATGA 1047 0.4795 MSSPFLQAIHIAFLVIVSVSIPASHAAHNKSPNLNTTVLDSPLLTKKIGANHTIKVDINGRGDFTSVQAAIDSVPEGNGKWTIIHIRKGVYKEKVHIPENKPYIFLRGNGRGRTSIVWSQSSKDNIESATFKVKAPHVVIFGISFKNDAPTGVAQTSQNQSVAAYVGAEMVAFYHCSFYSTHNTLFDYKGRHFYHNCYIQGSVDFIFGRGRSIFHNCEIFVIADQRVKISGSITAQNRQSGEDNSGFVFVKGKVYGIGGVYLGRAKGSHSRAVFAKVYMSRTIVPQGWTKWSYTGSTENLFQAEYKCYGPGAETENRASWSLQLTDEEAAPYLSVDFVDGQKWLPAWL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0077 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 48 344 - -
Vvi5g0077 348 SUPERFAMILY Pectin lyase-like 50 346 IPR011050 -
Vvi5g0077 348 Pfam Pectinesterase 55 340 IPR000070 GO:0030599|GO:0042545
Vvi5g0077 348 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Vvi5g0077 348 FunFam Pectinesterase 48 348 - -
Vvi5g0077 348 Gene3D - 48 347 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0077 Vvi-Chr5 686536 687981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0077 54 344 Carbohydrate Esterase AT5G47500 38.538 5.42e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0077 - - vvi:100267053 705.671