Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0068 ATGGCTTCTGGTTCGGAGGAGGGATCAGGGTTTCCGGCCGACGATTATGAGTCGTTGATAGCGACGACCGATGTGGAGCTGTTGAAGAGGGCGTGGAGGAACGAGAAGGCTGCTCCCGAGATTCTCCATTTTCAAACTGCGCTGGTGCAAAGATCTAGAGAACAGATCCAGTTGATGGAAGAAACTGTGGAGGAATTTGGAGAAAATGGTACTGATCCACTAACTGTATCACTCTATCAGATGGACTTGGATAGGACTCAGTTTTTGTTGAGATCATATCTTCGAATTCGTCTTCAGAAGATTGAGAAATACATGTTCCACATCTTAAAAACTGATGTTTGGAGTCGGCTTTCTGAGCAAGAGCAAAAGTTTGCCAAAAGGTGTACTGATGACATGGAAAGACATCTTGAACAGTCTGTTCTCTCAAGATTGCCAGATGGTTACCAGTCTATTCTAAAGCAGTCTGTAGCAAGTGAAGAGGATGACATGGTTCCGGAGCCACGGTTGGACACCTTTGTCTTCTGCAAAAGCAAAGGATCTATCGAAGCTTTCCAGCTTGATGACAGCAAAGAAGTGGTGGACCTGGTTGCTGATGATTTATACATTCTTCGCTACAACTCAGTAAAGCCACTCATAGAAAGCGGCCAAATTGATTTGGTGTAA 663 0.4465 MASGSEEGSGFPADDYESLIATTDVELLKRAWRNEKAAPEILHFQTALVQRSREQIQLMEETVEEFGENGTDPLTVSLYQMDLDRTQFLLRSYLRIRLQKIEKYMFHILKTDVWSRLSEQEQKFAKRCTDDMERHLEQSVLSRLPDGYQSILKQSVASEEDDMVPEPRLDTFVFCKSKGSIEAFQLDDSKEVVDLVADDLYILRYNSVKPLIESGQIDLV* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0068 220 Gene3D - 12 210 - -
Vvi5g0068 220 Pfam DNA replication complex GINS protein SLD5 C-terminus 167 220 IPR031633 -
Vvi5g0068 220 SUPERFAMILY PriA/YqbF domain 169 220 - -
Vvi5g0068 220 SUPERFAMILY GINS helical bundle-like 21 152 IPR036224 -
Vvi5g0068 220 PIRSF GINS_Sld5 2 220 IPR008591 GO:0006261
Vvi5g0068 220 Coils Coil 49 69 - -
Vvi5g0068 220 CDD GINS_B_Sld5 167 220 IPR031633 -
Vvi5g0068 220 FunFam DNA replication complex GINS protein SLD5 11 210 - -
Vvi5g0068 220 CDD GINS_A_Sld5 24 141 IPR038749 -
Vvi5g0068 220 Pfam GINS complex protein 47 121 IPR021151 -
Vvi5g0068 220 PANTHER SLD5 PROTEIN 12 220 IPR008591 GO:0006261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0068 Vvi-Chr5 602877 610049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0068 1 172 Core DNA Replication Machinery Family AT5G49010 63.006 1.83e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0068 K10735 - vri:117914731 434.106