Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0061 ATGGCGTCATCGGTGATCTCGAATCCCGTAACAAACTCCGACAGATCACGCGAGTCGTCCAAAAGGAAAAAGAAGAAGAAAAATCAAATCCAGAGCCAAGTCAGAGATCAGCAAAATCAGAACCACACAAAATGGAAGAGCCAAGTCCAGCAACAGCTTTACTCCTCCAAGCTTCTCCAAGCTCTGCGACAAGTTCGCCTCGGTTCTTCCAACGAGACGCCGCGCCGCGGCCGAGCCGTCCGCGAAGCCGCCGATCGAGCTCTTGCCGTCGCCGCTAAGGGCAGAACCAGGTGGAGCCGCGCCATCCTGACAAACCGGCTGAAGCTCAAGTTCATGAAACACAAGAGGCAGAGAGTGACGGTGACCGGACAGAATCGGTCGAAGAAGCCCAAAGTGAGTATTCTACGTCTGAAAGGGAAGAATTTGCCGGCTGTGCAACGGAAAGTTCGCGTTCTTGGCCGTTTAGTGCCCGGATGCCGGAAACTTCCATTGCCGGATATTCTGGAAGAAGCCACTGATTACATAGCTGCCTTGGAGATGCAGGTCAGAGCCATGACCGCTCTCACTGAACTCCTCTCCGGCGCCGGCGCCGGCGCCAGCACCACCTCCAGTAATTCGCCGGCCGACACTCTCGGCTCGAGCCGGCCTCCGACGAGCTAA 660 0.5621 MASSVISNPVTNSDRSRESSKRKKKKKNQIQSQVRDQQNQNHTKWKSQVQQQLYSSKLLQALRQVRLGSSNETPRRGRAVREAADRALAVAAKGRTRWSRAILTNRLKLKFMKHKRQRVTVTGQNRSKKPKVSILRLKGKNLPAVQRKVRVLGRLVPGCRKLPLPDILEEATDYIAALEMQVRAMTALTELLSGAGAGASTTSSNSPADTLGSSRPPTS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0061 219 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 47 192 IPR044660 GO:0006355
Vvi5g0061 219 MobiDBLite consensus disorder prediction 1 49 - -
Vvi5g0061 219 MobiDBLite consensus disorder prediction 32 49 - -
Vvi5g0061 219 CDD bHLH_AtIBH1_like 134 189 IPR044549 GO:0006355
Vvi5g0061 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Vvi5g0061 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 195 IPR036638 GO:0046983
Vvi5g0061 219 Coils Coil 20 40 - -
Vvi5g0061 219 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0061 Vvi-Chr5 556851 557510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0061 44 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 60.127 9.59e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0061 - - vvi:100243127 365.925