Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0060 ATGGGGGCTTCTCCAAATCCACCCGCTAGTGCCCGTGATTTGAAGGGCATGGTCCTTCAAAACAGGGCAAAGAGAAGGCAATGGAGGAAGAGAAGCATTCGAGGTGGCACTCAGAGGAGGATCTTGCTGAAGAGGAGGGCAGTTCTAGAAGGTTCTAGGAGGCTCAGAAGTGATGGGGTAATGAGAAGGGTGAGAACCCTCAAAAGTCTTGTCCCAAATGGCGAATCCATGGGCTTGGACGGCCTCTTCGCAGAGACAGCTTATTACATCATGTGGTTGCAAATGAGGGTGAAGGTTATGAAGACCATGGTCAACTCTTTATCAACTTGTGATTGA 336 0.494 MGASPNPPASARDLKGMVLQNRAKRRQWRKRSIRGGTQRRILLKRRAVLEGSRRLRSDGVMRRVRTLKSLVPNGESMGLDGLFAETAYYIMWLQMRVKVMKTMVNSLSTCD* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0060 111 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 107 IPR044660 GO:0006355
Vvi5g0060 111 CDD bHLH_AtIBH1_like 49 104 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0060 Vvi-Chr5 546215 546550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0060 16 108 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 44.330 1.68e-17 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0060 - - vvi:104879220 221.09