Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0058 ATGGAGGAGAAAGAGCAAGTGAAGACTGAGAATTCGATGGCTAATTCAACATTTTCCGATCAGATTCCGGCGAGTTGTGCTTTTTCTTCAAGCATCTTTGACATGCCATGTGAAGTTGAAAAGGGCTCATTAGGCTTCATGGACCTGTTGGGCATCCAAGACTACAGTCCTTCTCTATTCGATTTGCTTCAGCCTCCATTGGCGCCGCACCCCCTCACTTCACCGGCTTCCTCAGCTCCGCCGGAGTCGTCGGAGGTTGTGAACGCTCCGGCCACCCCTAACTCCTCGTCGATCTCTTCCTCGTCGACCGAAGCAGCGAATGATGATCAGACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGCGTTCATCACCAAGAGCGAAGTTGATCATCTTGACGATGGATACAGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGAGCGATCCTCCGATGATCCCACCACTGTTGTTACTACCTATGAAGGTCAGCACACTCATCCCTGTCCAGTGATGCCCCGTGGAAGTCTTGGGATTCCGCCGGAAGCTGTCACCTTCAGTGCAGCTGCTGCTTCCTCATTCGCCATGCCACAGCCTCAGTATCAGCAGCAGCAGCAACCCTATTTCAATAACTCTTCTCTTTCTTTGAACTTCAACCACATGAATTCCTCCTCCATTAACCCCACTTTCCTCCATGAGAGACGGCTCCGTCCTTCTCCAGCTTCTCTGCTGAGAGATCATGGACTTCTTGAGGACCTCCTGCCGTCCCAGATGTTTAAGGAGCCTAAAGAGGAGTAG 930 0.5097 MEEKEQVKTENSMANSTFSDQIPASCAFSSSIFDMPCEVEKGSLGFMDLLGIQDYSPSLFDLLQPPLAPHPLTSPASSAPPESSEVVNAPATPNSSSISSSSTEAANDDQTKAAEEEEQDQEKNKQQLKPKKKNQKRQREPRFAFITKSEVDHLDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDPTTVVTTYEGQHTHPCPVMPRGSLGIPPEAVTFSAAAASSFAMPQPQYQQQQQPYFNNSSLSLNFNHMNSSSINPTFLHERRLRPSPASLLRDHGLLEDLLPSQMFKEPKEE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0058 309 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi5g0058 309 MobiDBLite consensus disorder prediction 77 108 - -
Vvi5g0058 309 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g0058 309 MobiDBLite consensus disorder prediction 109 128 - -
Vvi5g0058 309 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi5g0058 309 Coils Coil 107 127 - -
Vvi5g0058 309 PIRSF WRKY_txn_fact_IIc 1 307 IPR017396 GO:0003700
Vvi5g0058 309 SUPERFAMILY WRKY DNA-binding domain 146 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi5g0058 309 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 251 IPR044810 GO:0003700
Vvi5g0058 309 MobiDBLite consensus disorder prediction 70 144 - -
Vvi5g0058 309 FunFam WRKY transcription factor 57 140 214 - -
Vvi5g0058 309 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi5g0058 309 Gene3D WRKY domain 138 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0058 Vvi-Chr5 530342 531666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0058 82 302 WRKY Transcription Factor Family AT5G49520 52.941 3.68e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi5g0058 WRKY 8.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0058 - - vvi:100260212 490.345