Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0056 ATGGACAGGCACAGAGGAGACCGCTACGGCAACAACCCTGACTCCCACCACTACCGCCATTCTCGGGGCCCTTCTCGGTCCTCCGACGCCTCCGGAAACCATCATCGCCGCAGCCCTAGCAGCTACCGTGTTGGCTTCTCCGGTGGTGGAGGCGGAGGCGGAGGCGGCCACCACCACCGCCCCTTTGACAGTCCTCCCCGTTATCCTCCCGGCGGTGCTGGGTTGCGGCCGATGGGTGGCGGGGGTGGGGGATTTGCATCGAATTATCAGGTGCCGCTCTCTGGTCAGAAACGGGGGTTTGGTTTCCCTGGCCGTGGAGGGTCTCCAGATCGTTATGATGGAGGTGGTTTTGCAAAACTTTTTGTTGGGTCGGTTCCAAGGACAGCCACTGAAGAAGATATACGCCCCTTGTTTGAAGAACATGGAAATGTCTTAGAAGTTGCGTTGATCAAAGATAAGAGAACTGGACAACAGCAAGGGTGTTGTTTTATAAAATATGCTACTTCAGAAGAAGCTGAAAGGGCAATTAGAGCTTTGCACAATCAATACACTTTGCCTGGGGGAGTGGGACCTATCCAAGTGAGATATGCTGATGGAGAACGAGAACGCCTTGGTGCAGTTGAATACAAGTTGTTTGTGGGCTCACTGAATAAACAGGCTACAGAAAAGGAAGTTAAGGAAATTTTTTCACCTTATGGTCAAGTTGAAGATGTCTACCTCATGCGTGATGAATTGAAGCAAAGTCGTGGATGTGGATTTGTTAAATTTTCTCATAGAGACATGGCAATGGCAGCTATTAATGCTCTTAATGGAATCTATACAATGAGAGGTTGTGATCAGCCATTAACTGTTCGGTTTGCTGATCCTAAGAGGCCTAGACCTGGGGAATCAAGGGGTGCTCCTGCATTTGGGGGTCCAGGTTTTGGCCCTCGATTTCAAGCACCAGGTGTTAGACCAACAATGAACCAAGGTGATCCTATAGGCAGTGGTCGAATTCCTCCTAATGCTTGGCGTCCAATGAGTCCACAGAATCTGGGCCCATCTTCTAATGCTGGTATTCATGGCTTTGGGAATCAGTCACTCCCAAGGTCTGGTGACGGATCAATATCTTCAACTCCTGGTGTTCCCCTGGGCGGTCTTGGTGGTTCAGCTGATGGTTCTCTTTCTGGAATTGCAGTTTCATCTTCTGCTACATCACAACAGAGTTTCAACCAGCCTATGCTACAAGTGCCTTCCATTGGTGAGCAAATATCACCGTTGCAGAAATCGCTTCAGTCTCCTCAGCATTTGCCACCTTCCCTGCAGCTACAGTCTCAAACTCCGGCATCTTATACACAGCCTCAAACTCCTCATTCATCATTACGACAATTTGGTCAGCTACAAATATCTCATTCTGCTGGTCAAACCCCCTTCAATCAAACACTTCCATCCCAACAGCTGCTTGGTTTGAGTGGACAGCTGTCTGGTTCTCAGCCTCAGGTCCAGCAGAGTGCCTCATCTGCTACTGCCCAGCAGACTCCTGTCAACCTCAACTTACAACAGCATGCTGTGTCTGTCATGGCAAATCAACATCAGGTGCCTGCTCCTTCTCAGCAGCAACTGGTCCAGCCTCTACACCAATCACCTTCTCAGTTGGCTCAGTTGCTATCACAACAAACGCAAGCCCTACAAGCTAGTTTCCAGTCATCTCAGCAGGCATTTTCTCAGCTGCAGCAACAATTGCAGCTGATGCAACCATCAAACCAAACTTTAACGTCACAGCAGGGTTCCCAGACTACTAAACAGCAGTGGCCTGGGACTGTACCACAGACTGTTGCCAGCACTGCTACCATCACACCAGCCACTGATGTGCCTTCCACAACTTCTGCTGTGCCTGTAACAACCCAGGCTGTGGCCCCTGTAAAATGTAATTGGACAGAGCACACTTCACCCGATGGATACAAATATTATCACAATAGTGTAACTGGTGAAAGCAGGTGGGAAAAACCAGAGGAGTTGACATTACTTGAACAACAGCAACAACAACAAAAGTCATCAGTTCAACAGTCACAAGCCCAATCACACACTCAAGTTTTGTCTACACAGCAAATTCCTCAAGCTCAACAAGTGCAGCTTCAAACTCAGCTCCAAGCACATCTCCAAGCACAGCTTCAGTCACAGCTCCGCCAACATCAGCAGATGCAACAGCCTCCAGTGTCTTCATCGTACCAGGCTTCTGGAGTTATGGGTCAGCAAAATGTTCAGGAACTTGGTTATGCTCAAGCACAGGTAGGGGCTAGTTCAGTTAACGATCCTGCACGCTTCCAACAGGGCCTTCAAGCGGCTCAGGAGTGGATGTGGAAGAATAAGCCAGCAGGCTCTTAA 2364 0.4932 MDRHRGDRYGNNPDSHHYRHSRGPSRSSDASGNHHRRSPSSYRVGFSGGGGGGGGGHHHRPFDSPPRYPPGGAGLRPMGGGGGGFASNYQVPLSGQKRGFGFPGRGGSPDRYDGGGFAKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTMRGCDQPLTVRFADPKRPRPGESRGAPAFGGPGFGPRFQAPGVRPTMNQGDPIGSGRIPPNAWRPMSPQNLGPSSNAGIHGFGNQSLPRSGDGSISSTPGVPLGGLGGSADGSLSGIAVSSSATSQQSFNQPMLQVPSIGEQISPLQKSLQSPQHLPPSLQLQSQTPASYTQPQTPHSSLRQFGQLQISHSAGQTPFNQTLPSQQLLGLSGQLSGSQPQVQQSASSATAQQTPVNLNLQQHAVSVMANQHQVPAPSQQQLVQPLHQSPSQLAQLLSQQTQALQASFQSSQQAFSQLQQQLQLMQPSNQTLTSQQGSQTTKQQWPGTVPQTVASTATITPATDVPSTTSAVPVTTQAVAPVKCNWTEHTSPDGYKYYHNSVTGESRWEKPEELTLLEQQQQQQKSSVQQSQAQSHTQVLSTQQIPQAQQVQLQTQLQAHLQAQLQSQLRQHQQMQQPPVSSSYQASGVMGQQNVQELGYAQAQVGASSVNDPARFQQGLQAAQEWMWKNKPAGS* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0056 787 MobiDBLite consensus disorder prediction 341 371 - -
Vvi5g0056 787 FunFam Flowering time control protein FCA 205 295 - -
Vvi5g0056 787 Gene3D - 204 294 IPR012677 -
Vvi5g0056 787 Gene3D - 116 203 IPR012677 -
Vvi5g0056 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 199 IPR000504 GO:0003723
Vvi5g0056 787 PANTHER RNA BINDING PROTEIN 41 596 - -
Vvi5g0056 787 Gene3D - 634 683 - -
Vvi5g0056 787 ProSiteProfiles WW/rsp5/WWP domain profile. 632 665 IPR001202 GO:0005515
Vvi5g0056 787 FunFam flowering time control protein FCA isoform X2 112 204 - -
Vvi5g0056 787 SUPERFAMILY WW domain 637 670 IPR036020 GO:0005515
Vvi5g0056 787 MobiDBLite consensus disorder prediction 581 601 - -
Vvi5g0056 787 MobiDBLite consensus disorder prediction 1 33 - -
Vvi5g0056 787 SUPERFAMILY RNA-binding domain, RBD 209 313 IPR035979 GO:0003676
Vvi5g0056 787 SMART rrm1_1 210 285 IPR000504 GO:0003723
Vvi5g0056 787 SMART rrm1_1 119 195 IPR000504 GO:0003723
Vvi5g0056 787 MobiDBLite consensus disorder prediction 1 109 - -
Vvi5g0056 787 SUPERFAMILY RNA-binding domain, RBD 105 203 IPR035979 GO:0003676
Vvi5g0056 787 MobiDBLite consensus disorder prediction 287 382 - -
Vvi5g0056 787 SMART ww_5 633 665 IPR001202 GO:0005515
Vvi5g0056 787 Pfam WW domain 636 663 IPR001202 GO:0005515
Vvi5g0056 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 289 IPR000504 GO:0003723
Vvi5g0056 787 MobiDBLite consensus disorder prediction 418 454 - -
Vvi5g0056 787 CDD WW 635 665 IPR001202 GO:0005515
Vvi5g0056 787 ProSitePatterns WW/rsp5/WWP domain signature. 638 663 IPR001202 GO:0005515
Vvi5g0056 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 184 IPR000504 GO:0003723
Vvi5g0056 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0056 Vvi-Chr5 508067 523510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0056 117 293 Eukaryotic Initiation Factors Gene Family AT4G34110 27.895 1.37e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0056 - - vvi:100255122 1205.28