Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0031 ATGGATGTTAATGGTAGAGGTGGTAGCTCCACCGTTTTGAGTGAAGAAGAGATGGACCTGAGGAGAGGCCCATGGACTGTGGAAGAAGATCTTACACTCGTCAATTACATTGCTACCCAGGGCGAAGGCCGCTGGAACTCTCTCGCTCGCTGTGCAGGCCTGAAAAGAACTGGAAAAAGCTGCAGATTGAGGTGGCTGAACTATCTCCGCCCAGATGTTCGACGTGGAAACATCACTCTCGAAGAACAACTTCTGATTCTTGAACTTCACTCCCGCTGGGGAAATCGGTGGTCGAAGATAGCACAGCACTTGCCGGGCAGAACAGACAATGAGATTAAAAACTACTGGAGAACCCGGGTTCAGAAGCATGCCAAGCAGCTGAAATGCGACGTTAACAGCAAGCAATTCAAGGACACCATGCGTTATCTATGGATGCCAAGGTTGGTGGAGAGGATTCAGGCTGCGGCGGCGGCCACATCAGGATCATCTCCGGCCGCCGTGGCCGCCCACCAGTTCAGTGGTAGCTGCGATATCGTCGCCGGAAGTGCGGCGGTTCCTCAGATGGCAGCCGGGGGCGCCGATTTCTACGGTGGGCAAGTCAGCACCGGTTACACCCCGGAGAATTCTAGCACAGCGGCTTCATCGGACTCGTTTGGAGCGCAGGTTTCACCCGTCTCGGACCTGACAGAGATTTACAATTTCCCGGTCAGTGACAACCAAAACCCGGATTTTTTCCAGACCGGCCAGGTTGGGTACACAGATTCGCTAATCAGCCCCTCGGGTTACTTCAACCAAGGATTGGATTTCCAATCCATGGAGCCAAACACCCAGTGGTACGAAGGCGGCGACACGGCCACGGCGGACAATTTGTGGAATGTGGAAGACATTTGGTCCGTACAGACGCAGTTCACCAACATCTGA 921 0.5385 MDVNGRGGSSTVLSEEEMDLRRGPWTVEEDLTLVNYIATQGEGRWNSLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAATSGSSPAAVAAHQFSGSCDIVAGSAAVPQMAAGGADFYGGQVSTGYTPENSSTAASSDSFGAQVSPVSDLTEIYNFPVSDNQNPDFFQTGQVGYTDSLISPSGYFNQGLDFQSMEPNTQWYEGGDTATADNLWNVEDIWSVQTQFTNI* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0031 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Vvi5g0031 306 Gene3D - 23 74 - -
Vvi5g0031 306 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vvi5g0031 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vvi5g0031 306 CDD SANT 24 69 IPR001005 -
Vvi5g0031 306 FunFam MYB transcription factor 79 142 - -
Vvi5g0031 306 SMART sant 21 71 IPR001005 -
Vvi5g0031 306 SMART sant 74 122 IPR001005 -
Vvi5g0031 306 Gene3D - 79 142 - -
Vvi5g0031 306 CDD SANT 95 118 IPR001005 -
Vvi5g0031 306 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vvi5g0031 306 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 233 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vvi5g0031 306 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vvi5g0031 306 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Vvi5g0031 306 FunFam Myb transcription factor 22 74 - -
Vvi5g0031 306 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0031 Vvi-Chr5 330422 331821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0031 1 297 MYB Transcription Factor Family AT3G06490 56.481 2.82e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi5g0031 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0031 K09422 - vvi:100248153 613.609