Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0016 ATGAGGAGGGGATGTATCAGGTTTACCATCAATGGCCACTCCAACTTCAACCTAGTCCTCATCGCAAGCGTTGGCGGAGCTTGTGATGTTCATGCTGTGGTCATCAAATGGTCAAGGGCTGGCTGGCAATCTATGTCCAGGAACTGGGGTCAAAACAACATGAGCAACGACCGAGGGCTAAGTGGACAGCATCCTTCACTAAGATACTTACAGACAAGATAG 222 0.491 MRRGCIRFTINGHSNFNLVLIASVGGACDVHAVVIKWSRAGWQSMSRNWGQNNMSNDRGLSGQHPSLRYLQTR* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0016 73 PRINTS Expansin signature 16 37 IPR002963 GO:0009664
Vvi5g0016 73 PRINTS Expansin signature 4 16 IPR002963 GO:0009664
Vvi5g0016 73 PRINTS Expansin signature 52 73 IPR002963 GO:0009664
Vvi5g0016 73 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Vvi5g0016 73 PANTHER EXPANSIN-A15 2 68 IPR002963 GO:0009664
Vvi5g0016 73 MobiDBLite consensus disorder prediction 53 73 - -
Vvi5g0016 73 Pfam Expansin C-terminal domain 6 70 IPR007117 -
Vvi5g0016 73 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 15 73 IPR007117 -
Vvi5g0016 73 SUPERFAMILY PHL pollen allergen 3 70 IPR036749 -
Vvi5g0016 73 Gene3D - 4 73 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0016 Vvi-Chr5 128138 128359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0016 1 68 Expansin Gene Family AT2G03090 66.176 3.40e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0016 - K20628 ncol:116263124 93.2041