Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0008 ATGGTTTCTGGTTCGGAGGAGGAATCAGGGTTTCCGGCCGACGATTATGAGTCGTTGATAGCGACGACCGATGTGGAGCTGTTGAAGAGGGCGTGGATGAACGAGAAGGCTGCTCCCGAGATTCTCCATTTTCAAACTAGAGAACAGATCCAGTTGATGGAAGAAACTGTGGAGGAATTTGGAGAAAATGGTACTGATCCACTAACTGTATCACTCTATCAGATGAACTTGGATAGGACTCAGTTTTTGTTGAGATCATATCTTCAAATTCGTCTTCAGAAGATTGAGAAATACATGTTCCACATCTTAAAAACTGATGTTTGGAGTTGGCTTTCTGAGCAAGAGCAAAAGTTTGCCAAAAGGTGTACTGATGACATGGAAAGACATCTTGAACAGTCTGTTCTCTCAAGATTGCCAGATGGTTACCAGTCTATTTTAAAGCAGTCCGTAGCAAGTGAAGAGGATGACATGGTTCCGGAGCCACGGTTGGACACCTTTGTCTTCTACAAAAGCAAAGGATCTATCGAAGCTTTCCAGCTTGATGACAGGTAA 552 0.4348 MVSGSEEESGFPADDYESLIATTDVELLKRAWMNEKAAPEILHFQTREQIQLMEETVEEFGENGTDPLTVSLYQMNLDRTQFLLRSYLQIRLQKIEKYMFHILKTDVWSWLSEQEQKFAKRCTDDMERHLEQSVLSRLPDGYQSILKQSVASEEDDMVPEPRLDTFVFYKSKGSIEAFQLDDR* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0008 183 CDD GINS_A_Sld5 24 135 IPR038749 -
Vvi5g0008 183 Pfam GINS complex protein 26 106 IPR021151 -
Vvi5g0008 183 SUPERFAMILY GINS helical bundle-like 21 146 IPR036224 -
Vvi5g0008 183 FunFam DNA replication complex GINS protein SLD5 9 183 - -
Vvi5g0008 183 Gene3D - 12 183 - -
Vvi5g0008 183 PANTHER SLD5 PROTEIN 8 178 IPR008591 GO:0006261
Vvi5g0008 183 PIRSF GINS_Sld5 1 182 IPR008591 GO:0006261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0008 Vvi-Chr5 65506 82703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0008 4 166 Core DNA Replication Machinery Family AT5G49010 58.235 7.40e-64 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0008 K10735 - vri:117914731 340.117