Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1578 ATGACCATTGATATGCCACCAGTTATGGCCCAAACTGTAAGAACGAGTAGGTCTTCATTTAGCTCTAGCAATGGCAATGAAACACCTTTGCACAACTCTGCCACTATCTCAAATGGAGATGGATATGATAGCGATGGTTCCAATTTTGCACCCCTTACACCAGGGTCATTGTCGGCAGCTATTCCAGCAGAACTTGCTGGAGCCATACCCTTGATTGATAGATTTCAGGTGGAAGGATTTTTGAGGTCAATGCAAAAACAGATTCAATCTTCTGGAAAACGTGGTTTTTTTTCTAAAAGATCGGTAGGGCCTCAAGTTCGAGACAAATTCACATTTGAGGATATGATGTGTTTCCAAAGGGATCCTATACCGACATCATTACTTAAAATTAACAGTGACCTGGTAAGTCGGGCAATAAAACTGTTCCAGATAATTTTGAAGTACATGGAAGTTGATTCATCTGATCGAGTAAGTCAAACAAGTTTAGATGAGCGGATTGAGCTTGTTGGGAAACTGTATAAGCAAACTTTAAAGCGTCCAGAGCTCCGAGACGAACTTTTTGCACAGATTTCAAAGCAAACAAGGAATAATCCTGATAGGCAACTTTTAATCAGAGCATGGGAGCTAATGTATTTATGTGCTTCCTCCATGCCTCCTAGCAAGGACATTGGTGGATATTTATCAGAGTATGTCCACAATGTAGCACATGGCATGAATGTTGATTCTGAGGTCCAAGTCCTTGCACTGTATACATTAAATGCTTTGAAGCGTTCCATTAAGGCTGGACCTAGACATACAATACCTGGACGTGAAGAGATTGAAGCTCTTTTAACTGGAAAAAAGCTTACTACTATAGTGTTTTTCTTGGATGAAACTTTTGAAGAAATTGCATACGACATGGCGACAACTGTAGCTGATGCTGTTGAGGAACTTGCAGGAATAATTAAACTCTCAGCATACTCTAGCTTCAGTTTGTTTGAATGCCGGAAAATTATTACTGGTTCTAAATCACCTGATCCTGGGAGCGAGGAGTATATTGGATTAGATGATAACAAATATATTGGGGATTTATTGGCGGAATTCAAGGCAGCAAAGGATAGAAGTAAAGGAGAAATTTTGCATTGCAAATTGATTTTCAAGAAGAAGTTATTTCGGGAATCAGATGAATCTGTAGCAGACCCTATGTTTGTGCAGTTATCCTATGTTCAATTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTTGCCCAGAATCATGCACTGATTGGACATCACTTTTGGAACGATTTCTACCTAGACAAATTGCAATCACCCGAGCAAAGAGGGATTGGGAGTCAGATATTCTTTCTCGCTATCATTTGATGGAACATTTGACAAAAGATGATGCAAGACAACAATTTCTAAGGATCTTGAGAACACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGGTTCATTTTTTCCGTCCAGTTCCAAAAGAGTATTTGCATTCTGCTGAACTAAGAGATATAATGCAATTTGGTAGCAGCAATACTGCTGTATTTTTTAAGATGAGAGTTGCAGGTGTCCTCCACATATTCCAGTTTGAAACTAAACAGGGAGAAGAAATTTGTGTTGCTCTTCAGACGCATATAAATGATGTTATGTTGCGTCGCTATTCTAAAGCACGGTCTGCTGCTAGTGGCTCTATGAATGGAGATTCTTCTAGTAATGTTAAGCCTCCTAGTGTTGAAGTCTATGAGAAACGTGTGCAAGATTTATCTAAAGCTTTGGAGGAATCCCAAAAGAATGCTATTCGATTATCAGAGGATTTGCATGAAAAGAAAAAGGAGCAGGAGAAAATGCAAGAAGAATTGGAGGGCTTGAAAGATTCCTTGATATCTGAGAAGCAGATCTTAACAGAAGTTATATGTGACCGTGATAAACTCAGATCATTATGCGATGAAAGAGATTCAGCCCTGCAGGCTGCATTGTTGGAGAAGAGGAGTATGGAAGTGAGATTGGGCAAGTTAAGTAGTCAAGGATTAGAAAACAATGCCAAAAAAGATTTAGTTGGAACAAATAGCCAGATGTTACTAAAACTCCAAGATGAGTTAAAAAGGCGTTGTGAGGAGTTGCATGTAGCCCAAGAAACTGCCAAAAGACTGGGAAATGAAAAACAATTATTGGAACAAAGAATTCAGAGGCTTGAAAAGAAGAAAGCCGATGAGGTGGAAGTTCTTGAGAAAAAATTTGAACAAGAAGGCAAGACCTTAAGGCTTCGAGTGTCTGAACTTGAAAGAAAACTAGAAGTAGTCACACAAGATTTGGCTGTTGCTGAGTCAACTCTTGCAGTTCGGGCTACAGATTTGGCTTCATTACAGAATAATTTAAAGGAATTAGAGGAATTGAGAGAAATGAAAGAGGACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCTGCTCAGCTAGCTGAGCTGGAAGTTCTTTACAAGGACGAACAAGTTCTAAGGAAGCGATATTTTAACATAATAGAAGATATGAAAGGCAAAATCAGAGTTTTCTGTCGGTTAAGGCCTCTTAGCGAAAAAGAGGTTGTTGAGAAAGAAAGATGTGTTCTTAATACTTTTGATGAGTTTACAGTTGAACATCCGTGGAAAGATGATAAAGCAAAGCAACATATATATGATCATGTGTTTGGTGGTAGTGCCACTCAAGAAGATGTGTTTGAGGATACAAGGTATTTGGTTCAATCGGCTGTAGATGGATATAATGTGTGCATATTTGCATATGGTCAGACTGGTTCTGGAAAGACATTCACAATTTATGGTTCTGATGGTAATCCCGGTCTTACCCCACGGGCTACTGCAGAACTTTTTAAGATTATAAAGCGAGATGCCAACAAATTCTCATTCTCGTTAAAGGCATACATGGTGGAGTTGTATCAAGATACACTTGTAGATCTTCTATTACCAAAGAATGCAAAGCGTTTGAAGCTGGACATTAAGAAAGATTCAAAGGGCATGGTATCTGTGGAGAATGTGTCTATTGCATCCTTATCAACATATGAGGAATTAAAAAGCATTATTCAAAGAGGATCTGAACAACGACATACATCTGGCACTCAAATGAATGAAGAAAGTTCAAGATCTCATTTGATTCTTTCAATTATCATTGAAAGTACCAATCTTCAAACCCAATCAGTTGCCAGAGGAAAGCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGGGTGAAGAAATCAGGCTCTTCAGGTAATCAACTTAAGGAAGCTCAAAGCATCAACAAGTCACTTTCAGCTCTTGGGGATGTTATCAGTGCTTTGTCATCTGGCGGTCAACACATACCTTATAGGAACCACAAGTTGACAATGTTGATGAGTGATTCACTTGGTGGCAATGCCAAAACTCTTATGTTCGTAAACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCATCAAAAGAAATTGTTCGTTTGAAAAAGTTGGTTGCATACTGGAAGGAACAAGCTGGAAGAAGGGGAGATGATGATGATTTTGAAGAAATCCAAGAAGAACGGAATATGAGAGAGAGAACAGATGGTCGGCACTCCATGTAG 3807 0.3903 MTIDMPPVMAQTVRTSRSSFSSSNGNETPLHNSATISNGDGYDSDGSNFAPLTPGSLSAAIPAELAGAIPLIDRFQVEGFLRSMQKQIQSSGKRGFFSKRSVGPQVRDKFTFEDMMCFQRDPIPTSLLKINSDLVSRAIKLFQIILKYMEVDSSDRVSQTSLDERIELVGKLYKQTLKRPELRDELFAQISKQTRNNPDRQLLIRAWELMYLCASSMPPSKDIGGYLSEYVHNVAHGMNVDSEVQVLALYTLNALKRSIKAGPRHTIPGREEIEALLTGKKLTTIVFFLDETFEEIAYDMATTVADAVEELAGIIKLSAYSSFSLFECRKIITGSKSPDPGSEEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHCKLIFKKKLFRESDESVADPMFVQLSYVQLQHDYILGNYPVGRDDAAQLSALQILIEIGFIGCPESCTDWTSLLERFLPRQIAITRAKRDWESDILSRYHLMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSAASGSMNGDSSSNVKPPSVEVYEKRVQDLSKALEESQKNAIRLSEDLHEKKKEQEKMQEELEGLKDSLISEKQILTEVICDRDKLRSLCDERDSALQAALLEKRSMEVRLGKLSSQGLENNAKKDLVGTNSQMLLKLQDELKRRCEELHVAQETAKRLGNEKQLLEQRIQRLEKKKADEVEVLEKKFEQEGKTLRLRVSELERKLEVVTQDLAVAESTLAVRATDLASLQNNLKELEELREMKEDIDRKNEQTAAILKMQAAQLAELEVLYKDEQVLRKRYFNIIEDMKGKIRVFCRLRPLSEKEVVEKERCVLNTFDEFTVEHPWKDDKAKQHIYDHVFGGSATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDGNPGLTPRATAELFKIIKRDANKFSFSLKAYMVELYQDTLVDLLLPKNAKRLKLDIKKDSKGMVSVENVSIASLSTYEELKSIIQRGSEQRHTSGTQMNEESSRSHLILSIIIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETYNSLTYASRVRSIVNDASKNVSSKEIVRLKKLVAYWKEQAGRRGDDDDFEEIQEERNMRERTDGRHSM* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1578 1268 SUPERFAMILY PH domain-like 502 590 - -
Vvi4g1578 1268 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 500 609 - -
Vvi4g1578 1268 SUPERFAMILY Second domain of FERM 380 497 IPR035963 -
Vvi4g1578 1268 Pfam MyTH4 domain 171 275 IPR000857 GO:0005856
Vvi4g1578 1268 MobiDBLite consensus disorder prediction 9 47 - -
Vvi4g1578 1268 PRINTS Kinesin heavy chain signature 1083 1100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1578 1268 PRINTS Kinesin heavy chain signature 1114 1132 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1578 1268 PRINTS Kinesin heavy chain signature 964 985 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1578 1268 PRINTS Kinesin heavy chain signature 1163 1184 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1578 1268 CDD KISc_C_terminal 890 1215 - -
Vvi4g1578 1268 Gene3D - 1216 1264 - -
Vvi4g1578 1268 MobiDBLite consensus disorder prediction 1244 1268 - -
Vvi4g1578 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 892 1240 IPR027417 -
Vvi4g1578 1268 ProSiteProfiles MyTH4 domain profile. 118 277 IPR000857 GO:0005856
Vvi4g1578 1268 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 281 384 - -
Vvi4g1578 1268 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 97 279 - -
Vvi4g1578 1268 CDD FERM_B-lobe 397 495 IPR019748 -
Vvi4g1578 1268 FunFam Kinesin-like calmodulin-binding protein 836 1215 - -
Vvi4g1578 1268 CDD FERM_C_KCBP 499 605 - -
Vvi4g1578 1268 Coils Coil 620 672 - -
Vvi4g1578 1268 Pfam FERM central domain 388 502 IPR019748 -
Vvi4g1578 1268 Pfam Kinesin motor domain 898 1213 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1578 1268 ProSiteProfiles FERM domain profile. 282 596 IPR000299 GO:0005856
Vvi4g1578 1268 Gene3D - 281 384 - -
Vvi4g1578 1268 MobiDBLite consensus disorder prediction 1 47 - -
Vvi4g1578 1268 SMART MyTH4_1 118 277 IPR000857 GO:0005856
Vvi4g1578 1268 ProSitePatterns Kinesin motor domain signature. 1113 1124 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi4g1578 1268 Gene3D - 385 496 IPR014352 -
Vvi4g1578 1268 Gene3D MyTH4 domain 97 278 IPR038185 -
Vvi4g1578 1268 PANTHER MYOSIN VII, XV 4 898 - -
Vvi4g1578 1268 FunFam Kinesin-like calmodulin binding protein 385 496 - -
Vvi4g1578 1268 SMART kinesin_4 890 1221 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1578 1268 Gene3D - 500 608 IPR011993 -
Vvi4g1578 1268 SUPERFAMILY Prismane protein-like 835 895 IPR011254 GO:0003824|GO:0016491
Vvi4g1578 1268 ProSiteProfiles Kinesin motor domain profile. 892 1213 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1578 1268 SMART B41_5 278 502 IPR019749 -
Vvi4g1578 1268 Coils Coil 749 857 - -
Vvi4g1578 1268 Gene3D Kinesin motor domain 879 1215 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1578 Vvi-Chr4 23798951 23815329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1578 57 1263 Calmodulin-binding Proteins AT5G65930 76.821 0.0 1894