LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g1575	ATGGCTGCAGTCTGCTGCAGAAAATACACTTGGTATTATTGGCTATTCCAGTTCCAAATGGGCATGCCGGCTTGGATAGCCTTTGCCATCATCTTGTTAAGTCGCTCGATCGCCGGAGCTCAGAAGCTGAAAACTTCCGGCTTTGAGTTGGGGCCCTTCGACAACTCCCATTATGATTCCTTGGCAGTTGTACAACCGGCTATGATCAGCAACGGAGCCCTGCAGGTGACTCCCGATTCGGCCGGTAACTTCAGCCTAGCGCACAGGTCAGGCCGAGTATTGTTCAATCGACCATTCAAGCTTTGGGAGGGAGATGGCAATGGAAGGGTGGCTTCCTTCAACTCTTCCTTCCTCATCAACATCTTTCGGTTGAATAATGATTCAGCCCCGGGCGAAGGTTTCGCCTTCATCATAGCGCCGGACCTGAACCTCCCACCTGGCAGCGACGGTGAGTACCTTGGGTTGACCAACTCCACCACCGACGGCAACCCCAACAACCACTTGATCGCCGTGGAGCTGGACACCTTCAAACAGGATTTTGATTCCAATGACAACCATATTGGCCTGGACATCAACAGCATCCGATCTAATAGAACCGTGTCCTTGTCCGACTTGGGCATCCAGATCGCCCCTTTGGATCCGAAGAATTACAGCGTATGGGTAGAGTACGACGGCGAAAACAAGGTCATGGACGTATACATGGTGGAGGAAGGGAATCCCAGGCCCGCCGAACCAGTGATGAGCGCGAAGGTTGAGTTGAGAGAGATAGTAAAGCAGTACTCGTACATGGGATTCGCGGCGTCAACAGGGAACGCGACTCAGCTCAATTGCGTGCTGCAGTGGAACCTGACTGTGGAGTTGCTGGAGGAGGACGGGGACGCCGAGTGGGTGAAGGTGGTTTTGGGTGCTGGGGTGCCGGCCATAGTAGTCGTGCTCATAGCTTGTGTGTTTTTGTGGTATTACGTCCAGAAGAAGCGGAGGGCAAAGTCGGATCCAAACATATTGGGAACCCTGAGAAGCCTGCCGGGGACGCCCAGGGAATTTGAGTTCAAGGATCTGAAGAAGGCCACAAACAACTTCGATGAGAAGCTGAAGCTGGGTGAAGGTGGCTTCGGAGTCGTGTACAAAGGACTACTGCCCAAGGAGCATGTTCATGTTGCCGTCAAGAAGTTCTCCAGAGACGTCAAGGGTAAAGACGATTTTTTGGCTGAGCTTACCATAATTAATCGCCTTCGCCACAAGCATCTTGTTCCATTACTCGGATGGTGCCACAAGAATGGAATGCTTCTTTTGGTGTATGATTACATGCCAAATGGGAGTCTGGATAAACAGCTTTTCTGCGGAAGGGAGATGCGGACGCTGGAATGGAGTGTGAGGTACAAGATCATAGCGGGGGTAGCATCAGCATTACATTATCTTCATAACGAGTACGATCAGAGAGTGGTGCATCGGGACCTTAAGGCCAGCAACATAATGTTGGATTCCAACTACAATGCGCGGCTAGGCGACTTTGGACTTGCGCGAGCCTTGGAGAATGAGAAGAACTCATACGCGGAGCTGGAGGGAGTGCCGGGTACAATGGGTTACATTGCACCCGAGTGTTTCCATACTGGGAAGGCCACCCCAGAGTCTGACGTCTACGGGTTCGGGGCGGTCTTGCTGGAGGTGGTGTGCGCTCAGCGTCCTTGGGCCAGCGACGCTACCTTCCACTTCTTAGTGGATTGGGTGTGGTGTCTGCATCGAGAAGGGCGCATAGTTGAGGCGGTGGATGAGAGGCTGGGGAATGATTACGTGGTTGAGGAGGCTCAGAGGCTTCTGCTGCTGGGGCTGGCTTGCTCGCATCCTATAGCCACTGAGAGGCCCAAGACACAGGCCATTGTTCAGGTTTTATCGGGATCTGTATCGGTGCCCTATGTCCCGCCCTTCAAGCCCGCTTTTGTGTGGCCATCCATGGCTTCTGTTCCCACGGCTACCGATATTGACATCACGGATGATACATCCTCTCGTTTCGACTCTGGTTGGACCCCAGAGTGCATTAGCCGGGAGAGCTACGTCTGA	2058	0.5306	MAAVCCRKYTWYYWLFQFQMGMPAWIAFAIILLSRSIAGAQKLKTSGFELGPFDNSHYDSLAVVQPAMISNGALQVTPDSAGNFSLAHRSGRVLFNRPFKLWEGDGNGRVASFNSSFLINIFRLNNDSAPGEGFAFIIAPDLNLPPGSDGEYLGLTNSTTDGNPNNHLIAVELDTFKQDFDSNDNHIGLDINSIRSNRTVSLSDLGIQIAPLDPKNYSVWVEYDGENKVMDVYMVEEGNPRPAEPVMSAKVELREIVKQYSYMGFAASTGNATQLNCVLQWNLTVELLEEDGDAEWVKVVLGAGVPAIVVVLIACVFLWYYVQKKRRAKSDPNILGTLRSLPGTPREFEFKDLKKATNNFDEKLKLGEGGFGVVYKGLLPKEHVHVAVKKFSRDVKGKDDFLAELTIINRLRHKHLVPLLGWCHKNGMLLLVYDYMPNGSLDKQLFCGREMRTLEWSVRYKIIAGVASALHYLHNEYDQRVVHRDLKASNIMLDSNYNARLGDFGLARALENEKNSYAELEGVPGTMGYIAPECFHTGKATPESDVYGFGAVLLEVVCAQRPWASDATFHFLVDWVWCLHREGRIVEAVDERLGNDYVVEEAQRLLLLGLACSHPIATERPKTQAIVQVLSGSVSVPYVPPFKPAFVWPSMASVPTATDIDITDDTSSRFDSGWTPECISRESYV*	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g1575	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	481	493	IPR008271	GO:0004672\|GO:0006468
	Vvi4g1575	685	FunFam	probable L-type lectin-domain containing receptor kinase S.5	436	635	-	-
	Vvi4g1575	685	CDD	STKc_IRAK	366	630	-	-
	Vvi4g1575	685	ProSitePatterns	Legume lectins beta-chain signature.	169	175	IPR019825	-
	Vvi4g1575	685	Pfam	Legume lectin domain	52	286	IPR001220	GO:0030246
	Vvi4g1575	685	Gene3D	Phosphorylase Kinase; domain 1	345	435	-	-
	Vvi4g1575	685	SUPERFAMILY	Protein kinase-like (PK-like)	343	658	IPR011009	-
	Vvi4g1575	685	SMART	serkin_6	360	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g1575	685	ProSiteProfiles	Protein kinase domain profile.	360	639	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g1575	685	CDD	lectin_legume_LecRK_Arcelin_ConA	67	287	IPR001220	GO:0030246
	Vvi4g1575	685	FunFam	probable L-type lectin-domain containing receptor kinase S.5	345	435	-	-
	Vvi4g1575	685	Pfam	Protein kinase domain	362	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g1575	685	Gene3D	Transferase(Phosphotransferase) domain 1	436	636	-	-
	Vvi4g1575	685	Gene3D	-	45	300	-	-
	Vvi4g1575	685	SUPERFAMILY	Concanavalin A-like lectins/glucanases	53	292	IPR013320	-
	Vvi4g1575	685	FunFam	Putative L-type lectin-domain containing receptor kinase S.5	44	298	-	-
	Vvi4g1575	685	PANTHER	-	76	640	-	-
	Vvi4g1575	685	ProSitePatterns	Protein kinases ATP-binding region signature.	366	390	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g1575	Vvi-Chr4	23774894	23777420	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g1575	52	642	Receptor kinase-like Gene Family	AT3G53810	39.355	1.97e-127	391

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi4g1575		Pkinase	4.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g1575	-		-	vvi:100251677	1390.17