Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1569 ATGGAGTTCGAACCATTGAGCATGGGTAATGAGGTGATTGAATTCGACATGATGGGGATAGGAGATGACGCCGTCGACATTGAGCATCCCGTTGACGAGGACGATCTTCTCGACTCCTCTGCTGGCGCTGTTGCTGTTTGTGCTTCTGCTTCTGCTGGGGAAGTTTACATCCCCGAAGGAGATACTAACCTTGAACCTTACGAGGGTATGGAATTTGAATCCGAAGAGGCTGCCAAGGCCTTCTACAATTCTTATGCTCGCCGTGTTGGGTTTAGTACTCGTGTCAGCATGTCTCGCCGCTCCAGGCGTGATGGAGCCATCATCCAGAGATCATTCGTCTGTGCGAAAGAGGGTTTTCGTGTTGACAAGGAGAAACCTGGCCGCGACGGCAGAGTGAAGCGCCCCCGTGCTGAAACCAGAGTTGGTTGTAAGGCCATGTTGGTGGTTAAGATTCAAGATTCAAGCAGATGGGTTGTCTCTGGGTTTGTCAAGGAACATAACCATGAGCTGGTCCCTCCTGATAAGGTGCATTGTCTCCGCTCTCACCGCCATGTTTCTGGTGCCGCCAAGTCCTTGATTGATACCTTGCAAGGCGCTGGGATTGGACCCAGTGGGATAATGTCTGCTCTTATTAAAGAATATGGTGGAATTAGCAATGTTGGATTCACAGAGCGTGACTGTAGGAATTACATGAGAAGTAGTCGGCAGAGGACCCTTGGAGGGGATACCCAGCTCCTCTTGGACTATCTAAGGAACATGCAAGCTGAGAACCCGGCCTTTGTCTATGCTGTCCAGGGAGATGAAGATCAGTGCATGAGCAACATCTTCTGGGCTGACCCAAAGGCAAGGATGAACTACACTTACTTTGGTGATACAGTTACCTTTGACACAACATACAGGTCAAACCGGTATCGGTTGCCCTTTGCACCCTTTACAGGAGTGAACCATCATGGACAGCCTGTGTTGTTTGGCTGTGCCCTCCTAATAAATGAATCTGAAGCATCATTTGTTTGGCTATTTAAAACATGGCTTGCGGCAATGTCTGGTCGTCCTCCAGTCTCAATCACTACCGATCATGATCGAGTGATTCGATTGGCCGTTACACAGGTTTTTCCAGTGACCCGTCACCGTTTCTGCAAGTGGCACATCTTTAAGGAATGCCAAGAGAAGTTATCCCATGTGCTTTCCGGACATCCGAATTTTGAAGCAGAACTCCATAAATGTGTAAACCTGACTGAGTCCATTGAAGAGTTTGAATCTTGTTGGTTTTCCCTAATTGATAGATATTACCTCAGGGAACATGAGTGGCTTCAAACAGTTTTTTCTGATCGCCGGCAGTGGGTCCCTGTATACTTGAGGGACACTTTCTTTGCAGAAATGTCCATAACACAACGCAGCGATAGCATGAACTCCTACTTTGATGGGTATGTGAATGCATCAACAACTCTGCAGCTTTTTGTCAAGCAGTATGAGAAGGCTTTGGAAAGTCGCTATGAGAAAGAAGTTAAAGCAGATTATGATACGATTAATACTAGCCCCAGTCTAAAGACCCCATCACCGATGGAGAAACAGGCAGCTGAACTCTACACAAGGAAACTATTTATGAAATTTCAAGAGGAGCTAGTTGAGACTCTTACTTTCTTGGCGACCAAAGTTGAGGATCAGGATGCAATCAGTATCTATCGAGTAGCTAAATTTGGGGAAAGCCATAAAGCTTACTTTGTTAGATTTAATGTTCGAGAGATGAAAGCAACTTGTAGCTGCCAGATGTTTGAGTTCTCTGGCCTACTTTGTAGACATATATTGACAGTCTTCAGGGTGACCAATGTCCTCACTCTACCATCTCGCTATGTTTTGAAGCGATGGACGAGAAATGCCAAGAGTGGCGTCATATTGGAGGAACGAGCCAATGATTTGTTGAATAGTTCCCGAGAATCTCTTACTGTGCGATATAACAATCTTCGTCATGAGGCCCTTAAGTATGTAGATGAAGGTGTGAAAACCATAGACATCTACAATGTGGCAGCGGCTGCTTTACAAGAGGCAGCAGATAAAGTTGCTCTTGCAAAAAAGAATGGTGGGAGAATAGCTAATGTCAATGGAGCTGGCAGAGAAGACCGCACTACTCAGGGAAATCATGCTAGTGCTTCCTTTGGGGATCATCAATGGGGTTTAGAGCAATCTCCATCTATGGAAAATCCAGAAACTATCACGTCAGCTGGAACGCGCACGGCGAAAATGTGA 2244 0.4617 MEFEPLSMGNEVIEFDMMGIGDDAVDIEHPVDEDDLLDSSAGAVAVCASASAGEVYIPEGDTNLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVDKEKPGRDGRVKRPRAETRVGCKAMLVVKIQDSSRWVVSGFVKEHNHELVPPDKVHCLRSHRHVSGAAKSLIDTLQGAGIGPSGIMSALIKEYGGISNVGFTERDCRNYMRSSRQRTLGGDTQLLLDYLRNMQAENPAFVYAVQGDEDQCMSNIFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCALLINESEASFVWLFKTWLAAMSGRPPVSITTDHDRVIRLAVTQVFPVTRHRFCKWHIFKECQEKLSHVLSGHPNFEAELHKCVNLTESIEEFESCWFSLIDRYYLREHEWLQTVFSDRRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTTLQLFVKQYEKALESRYEKEVKADYDTINTSPSLKTPSPMEKQAAELYTRKLFMKFQEELVETLTFLATKVEDQDAISIYRVAKFGESHKAYFVRFNVREMKATCSCQMFEFSGLLCRHILTVFRVTNVLTLPSRYVLKRWTRNAKSGVILEERANDLLNSSRESLTVRYNNLRHEALKYVDEGVKTIDIYNVAAAALQEAADKVALAKKNGGRIANVNGAGREDRTTQGNHASASFGDHQWGLEQSPSMENPETITSAGTRTAKM* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1569 747 Pfam SWIM zinc finger 561 607 IPR007527 GO:0008270
Vvi4g1569 747 Pfam FAR1 DNA-binding domain 81 172 IPR004330 -
Vvi4g1569 747 SMART 26again6 584 611 IPR006564 GO:0008270
Vvi4g1569 747 ProSiteProfiles Zinc finger SWIM-type profile. 573 609 IPR007527 GO:0008270
Vvi4g1569 747 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 55 687 IPR031052 GO:0006355
Vvi4g1569 747 MobiDBLite consensus disorder prediction 703 747 - -
Vvi4g1569 747 Pfam MULE transposase domain 293 385 IPR018289 -
Vvi4g1569 747 MobiDBLite consensus disorder prediction 697 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1569 Vvi-Chr4 23709671 23722691 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi4g1569 MULE 8.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1569 - - vvi:100263583 1465.29