Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1564 ATGGGTGATGCCAAGGATGAGGAAGGGATGGGACAACATGCGGATGCGGTGGCTGAAGGGCAACCTCAAGACTTGAATCCGCCTCAACAACCCCTGGTTGATACACACCCCAATTCCCTTGATGCCCATACTGAAACTGATCCTCAAACTTCTATTCCCTCTGCTCCTCATATCACGCATGATGGGGAACGCTCCCCTCTTGTGAAGGGGGACGAGGAACAATTCAAGAGTGAGGTGAATGCACTCCCGGTAGTGAATGAACCGTTGAAGAAGGAGGTCAACGTGATGGAGCTTCATTCCCCTGCAGTTAAACCTCATTCACCTGAGAAAGAGGAAAAGTTGGATAATGTGGTTAAACCCTGTTCTCTTGAGAAACAGCAACAGTTGGATGATAAAGTCAAAGCAGTGGAGCTTCACCCACCCCATCCCCAAGTTGAGTCTCATCCTCATGAAAGTCAGCAAAATTTGAAGAATGAGGTTAGTGGAATGGAGGTGCCCGCGCCGGGAGATGAACTTCATTCTCCTCACAAGGAGGAACAGTTGAATAACGAGGTCAATGCAATGAAGGTACAGACAACCATAACTGAACTTCCTTCTCATGAAAACGAAGAACAAGGGAAGGATGAGGTCGATGCAGTGGAGGTAGAAACACCCAGTGTTCAAGCGCGTTCTCATGAGAATGAGGAACAATTGAAGACTGCAATGGACATGGATATGCCTGTAGCTGAAGCCCATTCTCAAGAGAATGAGGTGACTGCAATGGAGGTACACACGCCCAGAGAAAATGGCAACTTAAACCAATCGTTTCTTTTAGAGACAAATTTGTATGAGGGCAACGAATCAGGTACTGAGGAGGAGCAAGTGGCATTCATGAAAGAGCTGGAAAATTTCTTTCGGGAAAGGAGCATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAGGTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAACCCCCAAAGACATGTACTACTGTTTCATGGACATTTCGAGGTTTTTATGAGAAGGCACTTCTGGATTATGAAAGGCATAAAACACGTGGCGGTGAGCTCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATTGGTTTACTTAAACGCAAGAAACCATCGAACCTTGAGCATGCTGTCAAAGCTGCACGCACCAAAGCAGCTAAACCACAATTGGACACAGCAGTTGTTGATATTGGACCCCCAGCTGATTGGGTGAAGATCAATGTGCGGAGAACTAAAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGACACTGCATGGACAATTGTTTGTCAGAGTTCCATTTGAGCAGTCAGATTAG 1737 0.4698 MGDAKDEEGMGQHADAVAEGQPQDLNPPQQPLVDTHPNSLDAHTETDPQTSIPSAPHITHDGERSPLVKGDEEQFKSEVNALPVVNEPLKKEVNVMELHSPAVKPHSPEKEEKLDNVVKPCSLEKQQQLDDKVKAVELHPPHPQVESHPHESQQNLKNEVSGMEVPAPGDELHSPHKEEQLNNEVNAMKVQTTITELPSHENEEQGKDEVDAVEVETPSVQARSHENEEQLKTAMDMDMPVAEAHSQENEVTAMEVHTPRENGNLNQSFLLETNLYEGNESGTEEEQVAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELSVPVSSLAEPMNVENQASGSGRARRDAAARAMQGWHSQRLLGNGEVGDPIIKDKSSISLQKREKQLKNIGLLKRKKPSNLEHAVKAARTKAAKPQLDTAVVDIGPPADWVKINVRRTKDCFEVYALVPGLLREEVRVQSDPAGRLVITGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSD* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1564 578 CDD ARID 286 371 - -
Vvi4g1564 578 Gene3D - 475 578 IPR008978 -
Vvi4g1564 578 FunFam AT-rich interactive domain-containing protein 3 284 383 - -
Vvi4g1564 578 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 478 578 IPR002068 -
Vvi4g1564 578 Pfam ARID/BRIGHT DNA binding domain 287 371 IPR001606 GO:0003677
Vvi4g1564 578 SMART ARID_2 281 371 - -
Vvi4g1564 578 SMART bright_3 285 376 IPR001606 GO:0003677
Vvi4g1564 578 SUPERFAMILY ARID-like 276 384 IPR036431 GO:0003677
Vvi4g1564 578 Pfam Hsp20/alpha crystallin family 495 576 IPR002068 -
Vvi4g1564 578 FunFam AT-rich interactive domain-containing protein 3 470 578 - -
Vvi4g1564 578 CDD ACD_sHsps-like 493 573 - -
Vvi4g1564 578 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 159 577 IPR045147 GO:0006357
Vvi4g1564 578 Gene3D - 284 381 IPR036431 GO:0003677
Vvi4g1564 578 ProSiteProfiles ARID domain profile. 284 375 IPR001606 GO:0003677
Vvi4g1564 578 MobiDBLite consensus disorder prediction 23 56 - -
Vvi4g1564 578 MobiDBLite consensus disorder prediction 1 72 - -
Vvi4g1564 578 SUPERFAMILY HSP20-like chaperones 487 574 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1564 Vvi-Chr4 23633698 23642218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1564 257 576 ARID Transcription Factor Family AT1G76510 62.270 3.10e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi4g1564 HSP20 9.3e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1564 - - vvi:100244857 1156.35