Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1559 ATGGCTGATATAGAGTGCCCCAACATCCGAAACATATGCATACTGGCTCATGTCGATCACGGCAAAACCACCCTGGCCGACCACCTCATCGCGGCGGCCGCAGATGGCTTGGTCCATCCGAAGCAGGCCGGGCGTCTCAGATTCATGGACTACCTCGACGAGGAACAGCGGCGGGCCATCACCATGAAGAGCTCCTCGGTAACTCTGCGTTTCAACGATATCTACCACATCAACTTGATCGACTCTCCGGGTCACATGGATTTCTGCAGCGAGGTTTCCACGGCAGCGCGGCTCAGCGACGGCGCTCTGGTGCTGGTGGACGCCGTGGAGGGCGTTCACATCCAGACCCACGCCGTGCTCCGCCAGGCCTGGACCGAGCGGCTCTCACCCTGTCTTGTCCTTAATAAGATTGATAGATTGATTAGTGAGTTAAAATTGAGTCCTTTAGAGGCGTATTCTAAACTGGTCAGGATTGTTCATGAAGTTAATGGGATTATGAGCGCGTTTAAGTCACAGAAGTACTTGTCGGATGTTGATTTATTGCTTGCAGGACCGGCGGGTGAGAATTTGGAGAATTTGGAGCTTGTGGAGGACGATGAAGAGGATACTTTCCAACCTCAGAAGGGGAATGTGGCGTTTGTGTGCGCTTTGGACGGGTGGGGTTTTAGGATAAATGAGTTTGCGGAGTTCTATGTCTCAAAGCTCGGGGCGAGTGCGGCTGCATTGCAGAAGGCGTTGTGGGGGCCCAAGTATTATAACCAAAAGACTAAGATGATTGTGGGGAAAAAGGGAATGGGTGGAGGTAGTAAGGCGAGGCCTATGTTCGTGCAGTTTGTGCTCGAGCCACTGTGGCAAGTGTACCAGGCAGCTTTGGAGCCTGATGGAGATAAGAGTATGCTGCAGAAGGTGATTAAGTCCTTTAACTTGAATGTGTCAGCGCGGGAACTTCAGCATAAGGATCCAAAAGTTGTGCTTCTAGCTGTGTTGAGTCGATGGCTTCCCTTGTCGGATGCAATCTTGTCAATGGTGGTTAAGTGTATTCCGGATCCAATGAGAGCTCAATCTTTTCGTATCTCACGTTTGCTTCCCAAGAGAGAGGTTTCAGATGATGGGCCTAGCTCTAATGTGCTTGCAGAAGCGGAGCTTGTGAGAAAATCGGTGGAGGCTTGTGATTTCAGCCCTGAAGCACCATGTGTTGCTTTCGTGTCAAAAATGTTTGCAGTACCCATTAAAATGCTCCCACAGAGGGGTCCAAATGGGGATATTTTAAACAATTCTACTGATGAAGGTGGAAGTGGTGAATCAGACGAATGCTTCATTGCATTTGCGAGGGTTTTCAGTGGGGTTCTTTTTGCAGGACAGAGAGTTTTTGTGCTTTCAGCTTTATATGATCCATTAAAACCGGAGGCAATGCAGAAGCATGTGCAGGAAGCTGAGTTGCACTCCTTGTACCTCATGATGGGTCAGGGGTTGAAACCAGTGGCATTAGCGAAGGCAGGGAATATTGTGGCAATCCGAGGCCTTGGCCAGCATATATTGAAAAGTGCAACTCTTTCATCCACAAAAAACTGTTGGCCTTTCTCGAGTTTGGTGTTTCAGGTTTCCCCAACGCTAAGAGTGGCAATTGAGCCTTCTGATCCTACAGATATGGGTGCCCTCATGAAAGGCTTGAGGCTTCTTAACCGGGCAGACCCATTTGTGGAAGTCTCTGTTTCTGCTAGGGGAGAACATGTGCTTGCTGCTGCGGGAGAAGTTCATCTTGAGCGTTGCATAAAAGATTTGAAGGATAGATTTGCAAGGGTAAGCTTGGAAGTCTCTCCACCACTTGTCCCCTATAAAGAGACTATCCAAGGTGAGGTAAGTGATCTACTAGAGAATTTGAAATCGTTAAGTGGGAGCTTGGATTATATTGAAAGGAAAACACCAAATGGAAGATGTTGTGTTCGAGTACAAGTTTTGAAGCTTCCACCTTCACTGACTAAGGTGCTTGATAAAAGTGCTGATTTGCTTCGAGATATCATCGGAGGTAAGCTGGGCCAGTCCAATAAAAGCTCTGAAACTCAGAGATCAAGTCGTCTGGAAGATGAGAATTCAATTGAAGCTCTTAGAAAGCGAATAATGGATGCTGTGGAGGGTGATATTTTGGGTGGGACTGAAGAAAGTGACAAGGATCGGGCTGAGAAATGTAAAGCAATGTGGCTACAGTTTCTTAAGAGGATCTGGGCACTTGGACCTAGGCAGATTGGTCCTAATATCCTCTTCACCCCAGATTCCAGAGGGGAGGATGTTGAATTTCCTGTTCTTGTCAGGGGCTCCTCCCATGTATCTGAGAGATTGGGGTTTGTGGATGAATCTAGTAATGGTGGTATGGATGCAGAGCCATCTTCAGTTGTAACTCCGGCACTGTGCATGGAAGCTGAGAGTCTTGAGAGCAGTGTAATATCTGGATTTCAACTAGCTACTGCAGCTGGACCTTTATGCGAGGAACCAATGTGGGGTTTGGCTTTTGTTATTGAAGCACGCATTTCTCCATTGGAGGGACAACAGTCTGATGACTTAGAAACTTCTTACCAACCACTAGAGCAATATGGAATCTTCACAGGGCAGGTGATGAATACAGTGAAGGATGCTTGTAGGACAGCTGTGCTACAGAAGAAACCCCGGCTTGTGGAAGCCATGTATTTTTGTGAGTTGAACACTCCAACTGAATACCTAGGTCCTATGTATGCTGTGCTTGCTCGTAGGCGGGCTCGAGTTTTGAAGGAAGAAATGCAGGAAGGTTCTTCACTATTTACTGTACATGCTTATGTGCCAGTTTCTGAAAGCTTTGGTTTTCCGGATGAACTGAGGAGATGGACTTCTGGAGCTTCAAGTGCTTTACTTGTACTTAGCCATTGGGAAGCACTTCCTGAGGATCCTTTCTTTGTACCAAAAACAGAAGAGGAGATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTGCATAATACAGCAAGAAAACTCATAGATGCAGTGAGACGGCAAAAGGGCCTTCCGGTAGAGGAAAAGGTAGTCCAGCATGCAACAAAGCAGAGGACCCTGGCTCGTAAAGTATAG 3093 0.474 MADIECPNIRNICILAHVDHGKTTLADHLIAAAADGLVHPKQAGRLRFMDYLDEEQRRAITMKSSSVTLRFNDIYHINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWTERLSPCLVLNKIDRLISELKLSPLEAYSKLVRIVHEVNGIMSAFKSQKYLSDVDLLLAGPAGENLENLELVEDDEEDTFQPQKGNVAFVCALDGWGFRINEFAEFYVSKLGASAAALQKALWGPKYYNQKTKMIVGKKGMGGGSKARPMFVQFVLEPLWQVYQAALEPDGDKSMLQKVIKSFNLNVSARELQHKDPKVVLLAVLSRWLPLSDAILSMVVKCIPDPMRAQSFRISRLLPKREVSDDGPSSNVLAEAELVRKSVEACDFSPEAPCVAFVSKMFAVPIKMLPQRGPNGDILNNSTDEGGSGESDECFIAFARVFSGVLFAGQRVFVLSALYDPLKPEAMQKHVQEAELHSLYLMMGQGLKPVALAKAGNIVAIRGLGQHILKSATLSSTKNCWPFSSLVFQVSPTLRVAIEPSDPTDMGALMKGLRLLNRADPFVEVSVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVPYKETIQGEVSDLLENLKSLSGSLDYIERKTPNGRCCVRVQVLKLPPSLTKVLDKSADLLRDIIGGKLGQSNKSSETQRSSRLEDENSIEALRKRIMDAVEGDILGGTEESDKDRAEKCKAMWLQFLKRIWALGPRQIGPNILFTPDSRGEDVEFPVLVRGSSHVSERLGFVDESSNGGMDAEPSSVVTPALCMEAESLESSVISGFQLATAAGPLCEEPMWGLAFVIEARISPLEGQQSDDLETSYQPLEQYGIFTGQVMNTVKDACRTAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSSLFTVHAYVPVSESFGFPDELRRWTSGASSALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLHNTARKLIDAVRRQKGLPVEEKVVQHATKQRTLARKV* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1559 1030 FunFam Elongation factor 2-like protein 1 212 - -
Vvi4g1559 1030 CDD EF2_II 397 521 - -
Vvi4g1559 1030 SUPERFAMILY Translation proteins 388 529 IPR009000 -
Vvi4g1559 1030 SUPERFAMILY EF-G C-terminal domain-like 533 608 IPR035647 -
Vvi4g1559 1030 Pfam Elongation factor Tu domain 2 439 518 IPR004161 GO:0005525
Vvi4g1559 1030 Gene3D Elongation Factor G (Translational Gtpase), domain 3 535 610 - -
Vvi4g1559 1030 SMART EFG_C_a 888 977 IPR000640 -
Vvi4g1559 1030 Gene3D Translation factors 350 533 - -
Vvi4g1559 1030 Pfam Elongation factor G C-terminus 889 973 IPR000640 -
Vvi4g1559 1030 FunFam Translation elongation factor 2 535 611 - -
Vvi4g1559 1030 CDD aeEF2_snRNP_like_IV 607 895 - -
Vvi4g1559 1030 PRINTS GTP-binding elongation factor signature 94 105 IPR000795 GO:0003924|GO:0005525
Vvi4g1559 1030 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924|GO:0005525
Vvi4g1559 1030 PRINTS GTP-binding elongation factor signature 78 88 IPR000795 GO:0003924|GO:0005525
Vvi4g1559 1030 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924|GO:0005525
Vvi4g1559 1030 PRINTS GTP-binding elongation factor signature 130 139 IPR000795 GO:0003924|GO:0005525
Vvi4g1559 1030 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 890 IPR020568 -
Vvi4g1559 1030 FunFam Elongation factor Tu family protein 350 533 - -
Vvi4g1559 1030 CDD eEF2_snRNP_like_C 891 970 - -
Vvi4g1559 1030 CDD EF2 10 232 - -
Vvi4g1559 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
Vvi4g1559 1030 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 240 IPR000795 GO:0003924|GO:0005525
Vvi4g1559 1030 FunFam Elongation factor like GTPase 1 224 333 - -
Vvi4g1559 1030 NCBIfam small GTP-binding protein domain 9 141 IPR005225 GO:0005525
Vvi4g1559 1030 Pfam Elongation factor Tu GTP binding domain 8 348 IPR000795 GO:0003924|GO:0005525
Vvi4g1559 1030 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 8 1029 - -
Vvi4g1559 1030 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Vvi4g1559 1030 CDD EF2_snRNP_III 536 607 - -
Vvi4g1559 1030 SUPERFAMILY EF-G C-terminal domain-like 891 990 IPR035647 -
Vvi4g1559 1030 Gene3D - 887 1022 - -
Vvi4g1559 1030 Gene3D - 2 214 IPR027417 -
Vvi4g1559 1030 Gene3D - 633 885 IPR014721 -
Vvi4g1559 1030 FunFam Elongation factor like GTPase 1 887 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1559 Vvi-Chr4 23620810 23623902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1559 1 1030 Eukaryotic Initiation Factors Gene Family AT3G22980 70.378 0.0 1479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1559 K14536 - vvi:100248167 2001.1