Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1557 ATGTCTGATGCGGAGATCCCGGAGGCAGTGACATGGCCGACGAACGGGAGTCTAACCCTAGAATGGGTGGATCATCTCATGACCGCCTTCGAATGGTGTTCCGGGAATCTTCCTCCCACCGATTTCCCTTCCCTTATGCCTGTTGCCGTCTTCGATAGTCTGGTGCTCACTGCTTCCAAGATTCTCCACAAAGAAGCAAACTGTGTTAGGATTGACCCCTCCCCCCTCGATTCCACCGTTGTAGTCGTCGGCGACGTCCATGGCCAGCTTCACGATGTAATCTTTCTCCTCCGGGACTCTGGCTTCCCTTCCCAAAACCGCTTCTACGTCTTTAACGGAGATTATGTCGATAGAGGCGCCTGGGGCCTTGAGACCTTTCTTCTCCTGCTCGCTTGGAAGGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATGGTGATAAAGGGAAGCATGTCTACCGCAAATGTTTAGGATGCTTTGAAGGACTTCCTTTGGCCTCTATTATAGCTGAACGTGTTTATACTGCTCATGGAGGGCTTTTCCGTAGTGTAGCTGTTAACTTGCCTAAGAGATCCAAAGGAAAGAAAAATCGGAGAATAAGTTTTAACCCTGAAATGAAGTCACTTTCTCTTGGTTCTTTGGAGGAATTATCAAAAGCTAGGAGATCGGTTCTTGATCCTCCTTGGGAGGGTTTAAACCTGATTCCTGGTGATGTGCTGTGGTCAGATCCATCAATGAGCCCTGGTCTCTCTCCAAATAAAGAAAGAGGCATTGGTCTATTGTGGGGTCCTGATTGCACAGAGGATTTCTTGAAGAAGCTCCATCTAAAGTTGATTATTAGATCACATGAAGGGCCTGATGCAAGGGAAAAGCGACCTGGTCTTGCAGGAATGAAGGAAGGGTACACTATAGATCATGTTGTAGAGTCAGGAAAGTTAATTACTCTGTTTAGTGCTCCAGACTACCCACAATTTCAGGCAACTGAGGAGAGATACCAAAATAAAGGGGCCTATATTGTCCTAGAACCCCCTGATTTTGATAATCCTGTGTTTCATACTTTTGAAGCGATTACTCCAAGGCCTAAGGTAAATCCCTACTATGACTACGAGGATGTGATTGATTCTGATGAAGAATTGGACTTTAGCAGGAATGATGTACACTCCGCGGATGAAGGTCAATCAGTGCCTGTTTTTCACATATAA 1266 0.4542 MSDAEIPEAVTWPTNGSLTLEWVDHLMTAFEWCSGNLPPTDFPSLMPVAVFDSLVLTASKILHKEANCVRIDPSPLDSTVVVVGDVHGQLHDVIFLLRDSGFPSQNRFYVFNGDYVDRGAWGLETFLLLLAWKVFMPDRVFLLRGNHESKYCTSVYGFEKEVMTKYGDKGKHVYRKCLGCFEGLPLASIIAERVYTAHGGLFRSVAVNLPKRSKGKKNRRISFNPEMKSLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMSPGLSPNKERGIGLLWGPDCTEDFLKKLHLKLIIRSHEGPDAREKRPGLAGMKEGYTIDHVVESGKLITLFSAPDYPQFQATEERYQNKGAYIVLEPPDFDNPVFHTFEAITPRPKVNPYYDYEDVIDSDEELDFSRNDVHSADEGQSVPVFHI* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1557 421 Gene3D - 14 414 IPR029052 -
Vvi4g1557 421 FunFam Serine/threonine-protein phosphatase 30 403 - -
Vvi4g1557 421 SUPERFAMILY Metallo-dependent phosphatases 46 386 IPR029052 -
Vvi4g1557 421 CDD MPP_PP7 12 389 IPR041754 -
Vvi4g1557 421 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 11 402 - -
Vvi4g1557 421 ProSitePatterns Serine/threonine specific protein phosphatases signature. 143 148 IPR006186 GO:0016787
Vvi4g1557 421 SMART pp2a_7 46 382 IPR006186 GO:0016787
Vvi4g1557 421 PRINTS Serine/threonine phosphatase family signature 109 136 IPR006186 GO:0016787
Vvi4g1557 421 PRINTS Serine/threonine phosphatase family signature 79 106 IPR006186 GO:0016787
Vvi4g1557 421 PRINTS Serine/threonine phosphatase family signature 239 266 IPR006186 GO:0016787
Vvi4g1557 421 PRINTS Serine/threonine phosphatase family signature 333 349 IPR006186 GO:0016787
Vvi4g1557 421 PRINTS Serine/threonine phosphatase family signature 142 166 IPR006186 GO:0016787
Vvi4g1557 421 PRINTS Serine/threonine phosphatase family signature 179 205 IPR006186 GO:0016787
Vvi4g1557 421 Pfam Calcineurin-like phosphoesterase 79 307 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1557 Vvi-Chr4 23611042 23617786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1557 7 299 Calmodulin-binding Proteins AT5G63870 76.271 2.13e-164 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1557 K04460 - vvi:100251768 863.988