Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1548 ATGGATGGTGGATTAGACGAAGCAAAAGAAGAAGAAAAGCCAGTCAAAGTAAAGCTCCAAGGTAGACGCCGACTCTGCAAACTTTCATCGAATGACGATGATGAAAATACCAAAACTGGAGATGGATTTTACGAACCGAAATTTTCTGAAATTTCCGATTTCGATTCGCCTCATCATTGCAGCAATGCTGGTGGAAATGAAATTAGGGGTATTCTCAATGACTTGAGCTCGAGGCTTGAATCTCTGTCCATAGAAACAAAGAGAAATCCTAAAAGGGCTGATCAGACTCGGGAATCTTTAAATTTTGCTGCTGCTGATGTGGCTATCAATCAAGAAAAGAAACTTGATGTGCCCGAGTATGCAAGCGCATCTTCCTCATTTTCTGTTACTTCTGATGGGGCTGATTCTTCGCCAGATGCAGCCTGGGTTGGAGATGGTGTTGACAATGTAGTGGATGATCATGAAGCGGGGAGTGAGGTTGGAAGCGTGCATGATGTTGATAACTTCATCAGTAGGGTACATGGAAATAGGCACAACGGTGAAGCGGCAAACTCCAGAAGGGTGAATGTGAACTCTGTGCCTATGGGGCAATCTTCCGTTTGTGATTTCGAAGAAGAAGAAGAAGATGGTAATAGCGATGATTGTGTAATTTTGAGTGGCAAAAAAGTTGTTGAAGCAGCGGTCAGCCGAGGGAGCAAGTTTAAGGAAGAGTATGATGATTCAGATGTGGTTGATGTATTGGATGATTGTACTGATGGTTCCGTTTTGGAGGATGAGAGTGCCATCACTTTGAGTGGTCCTAGATCTACCTATAAGTTGCCTGGTAAAATTGCAAAAATGTTATATCCACATCAACGTGATGGGTTGAAGTGGCTATGGTCTCTACATTGTCAGGGTAAGGGCGGGATCTTAGGTGATGACATGGGTCTAGGAAAAACAATGCAGATTTGTGGGTTTTTAGCTGGATTATTTCATTCCTGTTTGCTTCGGAGGGCAGTGGTTGTGGCCCCCAAAACATTACTGTCTCATTGGATCAAGGAGTTATCAGCTGTGGGGCTTTCTGAGAAGACAAGAGAATACTATGGGACTTGTACAAAAACACGGCAATATGAACTGCAGTATGTACTTCAGGATAAAGGGGTGCTTCTCACAACTTATGATATTGTGCGGAACAATTCAAAATCGTTATGTGGGGGCAACTACTTTCATGATAAGAGAAGTGAGGATGATTTCACCTGGGATTATATGATACTTGATGAGGGACATCTCATAAAGAATCCCAGTACACAAAGGGCTAAAAGTTTGATGGAAATACCTTGTGCTCATCGTATTGTTGTTAGTGGCACACCAATACAAAACAATCTTAAGGAATTATGGGCGTTATTTAGCTTTTGTTGCCCCGAGCTTTTGGGTGACAAGAATTGGTTTAAGGTCAAATATGAGTCTCCCATTCTTCGTGGAAATGACAAAAATGCTTCTGATAGGGAAAAACATATTAGTTCAAGAGTTGCAAAGGAGCTTAGAGAACGTATTCAACCTTATTTCTTGCGTCGCTTAAAGAATGAGGTATTTCATGAAGATGATGCCTCAGAAACTGCCAAACTTTCTAAAAAGAACGAGATTATCGTGTGGCTAAGATTGACAAGTTGCCAGCGACAACTATATGAAGCTTTTTTGAACAGTGAGATCGTTCTTTCAGCTTTTGATGGCTCACCATTGGCTGCAATTACGATTCTGAAAAAAATATGTGATCATCCCCTCCTCTTAACAAAAAGAGCCGTTGAAGATGTGTTGGAAGGAATGGATTCAATGCTAAATCAAGAAGACCTTGGTATGGCGTCGAAGCTAGCGATGCACTTAGCAACCGCCTATGAGAGAGATGATTTCTTGGAGAAGAATGACAACGTTTCATCCAAAATGTCTTTTATATTAGCTTTACTGGATACTTTAATTCCAGAGGGGCATAATGTTCTTATCTTTTCTCAAACTCGCAAGATGCTTAATCTCATTGAGGAATTGCTAATATCCAATGGTTACAAGTTCTTACGCATTGACGGTACCACAAAAGCTAATGACAGAGTGAAGATTGTTAATGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTGATCCAGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGACCGTGCTTACCGAATTGGCCAAACAAAGGACGTCATTGTGTACAGGTTAATGACATGTGGCACCATTGAAGAAAAGATATATAGAAAGCAGATATTCAAGGGGGGATTGTTTAGAACTGCAACTGAACACAAAGAACAAACTCGGTACTTCAGCCAACAGGACCTTCAAGAGCTTTTCAGCCTCCCTAAACATGGATTTGATGTCTCTGTCACTCAGCAACAATTGCATGAAGAGCATGATCACCAGCACAATATGGATGAATCTTTGAAAGAACACATAAAGTTCCTAGAAACTCAAGGTATAGCAGGAGTTAGCCATCACAATTTGCTTTTCTCCAAGACAGCACGCGTACTAGTTGTAGATGAAGAAGAGGAAGTGGCAAGGGCCAGCAGGACGGGAACTACATCCGTCATGAACAAATCTGCAGGCTCTTCACACGAACAAGATGTTGAATGGGCTCAGTATGCTTTCAAGCCAAAGGAGGTGAATCTGCATAAGACAAATTCTTCTGCAGACAGTGCAGGTAAACTGACAGAATCAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGGCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATTGCTGAACTGAATTTAGAGCTTGATAAGATGAGGATGACAAAAAGAATTGAAACGGAAGTTATTGATTTGGATGATGTGACCGGAAAGCTTGAGAATGTGCTGAACCTGTAG 2985 0.4157 MDGGLDEAKEEEKPVKVKLQGRRRLCKLSSNDDDENTKTGDGFYEPKFSEISDFDSPHHCSNAGGNEIRGILNDLSSRLESLSIETKRNPKRADQTRESLNFAAADVAINQEKKLDVPEYASASSSFSVTSDGADSSPDAAWVGDGVDNVVDDHEAGSEVGSVHDVDNFISRVHGNRHNGEAANSRRVNVNSVPMGQSSVCDFEEEEEDGNSDDCVILSGKKVVEAAVSRGSKFKEEYDDSDVVDVLDDCTDGSVLEDESAITLSGPRSTYKLPGKIAKMLYPHQRDGLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSCLLRRAVVVAPKTLLSHWIKELSAVGLSEKTREYYGTCTKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLCGGNYFHDKRSEDDFTWDYMILDEGHLIKNPSTQRAKSLMEIPCAHRIVVSGTPIQNNLKELWALFSFCCPELLGDKNWFKVKYESPILRGNDKNASDREKHISSRVAKELRERIQPYFLRRLKNEVFHEDDASETAKLSKKNEIIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAAITILKKICDHPLLLTKRAVEDVLEGMDSMLNQEDLGMASKLAMHLATAYERDDFLEKNDNVSSKMSFILALLDTLIPEGHNVLIFSQTRKMLNLIEELLISNGYKFLRIDGTTKANDRVKIVNDFQDGVGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTCGTIEEKIYRKQIFKGGLFRTATEHKEQTRYFSQQDLQELFSLPKHGFDVSVTQQQLHEEHDHQHNMDESLKEHIKFLETQGIAGVSHHNLLFSKTARVLVVDEEEEVARASRTGTTSVMNKSAGSSHEQDVEWAQYAFKPKEVNLHKTNSSADSAGKLTESEIKGRINRLSQILANKATVSKLPDKGERIQKQIAELNLELDKMRMTKRIETEVIDLDDVTGKLENVLNL* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1548 994 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 642 801 IPR001650 -
Vvi4g1548 994 Pfam Helicase conserved C-terminal domain 639 751 IPR001650 -
Vvi4g1548 994 Pfam SNF2-related domain 284 588 IPR000330 GO:0005524|GO:0140658
Vvi4g1548 994 SMART ultradead3 276 479 IPR014001 -
Vvi4g1548 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 813 IPR027417 -
Vvi4g1548 994 Coils Coil 951 971 - -
Vvi4g1548 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 518 IPR027417 -
Vvi4g1548 994 Gene3D - 540 840 IPR027417 -
Vvi4g1548 994 FunFam Protein CHROMATIN REMODELING 24 260 538 - -
Vvi4g1548 994 CDD SF2_C_SNF 636 762 - -
Vvi4g1548 994 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 293 468 IPR014001 -
Vvi4g1548 994 Gene3D - 264 539 IPR038718 -
Vvi4g1548 994 SMART helicmild6 668 751 IPR001650 -
Vvi4g1548 994 PANTHER SNF2/RAD54 FAMILY MEMBER 9 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1548 Vvi-Chr4 23417640 23453956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1548 630 805 RAD5 or RAD16-like Gene Family AT5G22750 34.659 4.36e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi4g1548 SNF2_N 1.6e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1548 K20093 - vvi:100261895 1930.22