Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1542 ATGGATTTGCTCACCCATTTGCTAGCATTCGCAGGGCTTTTTCTGGGTTTGTTGTATTGGTATAATCGATGGAGAGTTAGGACTCTCACTCACAATAGTAAGGGCATATCAGCCCCAAAACCCCCTGGTGCCTGGCCAATCATAGGTCATCTGCATCTCCTAAGTGGCCAAGTCCCAATTTTCCGAACCCTTGGAGCCATGGCTGATAAGCACGGCCCTGTGTTCATGATCCAACTAGGGATGCACCCAGCGGTAGTGGTCAGTAGTCATGAGGCTGTTAAGGAATGCTTCACTACCAACGACAAGGTTTTTGCCTCACGCCCACGTTCAAGCGTGTCAAAGCTCTTGGGTTACAACTATGCAGGGTTTGGCTTTGCACCTTACGGACCTTTTTGGCGTGAGATGCGCAAGCTATCGGTGGTGGAAATTCTCTCTGCTCGCCGCCTCAATGAATTGAAGGATGTACGGATTTCTGAATTGGATGCTTGCATCCAAGACTTGTACTCACTTGGCAAAGACAACAACTGGATCAGTCCAATAGAAGTGGTTATGAGTGAGTGGTTTGAACACTTGACATTCAATTTCGTTCTTAGGATGATTGCTGGGAAGAGATATTTTGATAACGCGGTCCATGGAAATGAAGAGGCAAGGGGTGCTATAATAGCCATTAAAAAATTCCTGTCTCTATCTGGGGCCTTTGTTCCATCAGATGTGTTTCCATTTCTTGAACGGTTGGATTTGAAAGGCTATTTGGGCTCCATGAAGCATGTTGCTGAGGAATTGGACTGTCTTGTAGGAAGTTGGGTAGAAGAACATGTTATGAGGTTAAAGAGTGAGCCCGGAAGCAGGCATGACTTCATTGATGTACTGCTATCAGCAGTCCAAGACACCTCCATGTTCGGCCACAGTCGTGAAACTGTTATCAAGGCAACGATAGGGAATCTCATCGTGGGAGGCTCAGACAGCACATCTATTACCTCGACATGGATCCTGTCTGCATTACTGAATAATAGAGAAGCAATGAAGCGTGCTCAGGAAGAGCTAGATCTAAAAGTTGGGAGGAGCAGATGGGTGGAAGAATCAGATATTCAGAAGCTAGATTACCTTCGGGCTATCATTAAGGAGTCTCTAAGGCTATATTCAGCTGCTCCCCTATTAGTACCGCATGAGGCGACCCAAGATTGTCATGTTTGTGGGTATCACATTCCTAAAGGTACCCGTTTGTTCGTGAATGCATGGAAGTTACACCGAGATCCGCGTGTTTGGTCCAACCCGGAAGAGTTTGAGCCAGAGAGGTTTTTGGGAAGTCATGCAAACCTGGATGTTTTTGGTCATCAATTTGAGCTCATCCCATTTGGGTCTGGTAGAAGGGCTTGCCCAGGGATCAACATGGCTTTGCAAATGTTACACTTGACATTTGCTAGGTTACTTCAAGGATTTGACATGGCCACACCATCAAATGCTCCGGTCGACATGACTGAAGGGATAAGTTTCACCATGCCTAAGTTAACCCCACTATGCGTTACTGATGCATTGAAAAAATCTGGTCTTGAATCATCAAACTTAATTCTTGGTATAGACTTCACAAAGAGCGATGAGTGGATAGTTAGGACTCTCACTCACAATAGTAAGGGCATATCAGCCCCAAAACCCCCTGGTGCCTGGCCAATCATAGGTCATCTGCATCTCCTAAGTGGCCAAGTCCCAATTTTCCGAACCCTTGGAGCCATGGCTGATAAGCACGGCCCTGTGTTCATGATCCAACTAGGGATGCACCCAGCGGTAGTGGTCAGTAGTCATGAGGCTGTTAAGGAATGCTTCACTACCAACGACAAGGTTTTTGCCTCACGCCCACGTTCTAGCGTGTCAAAGCTCCTGGGTTACAACTATGCAATGTTTGGCTCTGCACCTTATGGACTTTTTTGGCGTGAGATGCGCAAGCTATCAGTGGTGGAAATTCTCTCTGCTCGTCGTCTCAATGAATTGAAGGATGTACGGATTTCTGAATTGGATGCTTGCATCAAAGACTTGTACTCACTTGGCAAAGATAACAACTGGATCAGTCCAATAAAGGTGGTTATGAGTGAGTGGTTTGAACACTTGACATTCAATTTCGCCCTTAGGATGATTGCAGGGAAGAGATATTTTGATAACGCGGTCCATGGAAATGAAGAGGCAAGGGGTGCTATAATAACTATTAAGAAATACCTGTCTCTATCTGGGGCCTTTGTTCCATCAGATGTGTTCCCATTTCTTGAACGGTTGGATTTGCAAGGCTATTTGGGCTCCATGAAGCATGTTACAGAGGAATTGGACTGTCTTGTAGGAAGTTGGGTAGAAGAACATGTTATGAGGTTAAAGAGTGAGCCCGGATGCAGGCATGACTTCATTGATGTACTGCTATCAACAGTCCAGGACACGTCCATGTTCGGCCACACCCGTGAAACTGTTATCAAGGCAACAATAGTGAATCTCATCGTGGGAGGCTCAGACAGCACATCTATTACCTCGACATGGATCCTGTCTGCATTACTGAATAATAGAGAAGCAATGAAGCATGCTCAGGAAGAGCTAGATCTAAAAGTTGGGAGGAGCAGATGGGTGGAAGAATCAGATATTCAGAAGCTAGATTACCTTCGGGCTATCATTAAGGAGTCTCTAAGGCTATATCCAGCTGCTCCCCTATTAGTACCGCATGAGGCGACCCAAGATTGTCATGTTTGTGGGTATCACATTCCTAAAGGTACCCGTTTGTTCGTGAATGCATGGAAGTTACACCGAGATCCGCGTGTTTGGTCCAACCCGGAAGAGTTTGAGCCAGAGAGGTTTTTGGGAAGTCATGCAAACCTGGATGTTTTTGGTCATCAATTTGAGCTCATCCCATTTGGGTCTGGTAGAAGGGCTTGCCCAGGGATCAACATGGCTTTGCAAATGTTACACTTGACATTTGCTAGGTTACTTCAAGGATTTGACATGGCCACACCATCAAATGCTCCGGTCGACATGACTGAAGGGATAAGTTTCACCATGCCTAAGTTAACCCCACTACGCGTTATGCTCACTCCTCGCCTTCCTTCTCACCTCTATTAG 3090 0.4605 MDLLTHLLAFAGLFLGLLYWYNRWRVRTLTHNSKGISAPKPPGAWPIIGHLHLLSGQVPIFRTLGAMADKHGPVFMIQLGMHPAVVVSSHEAVKECFTTNDKVFASRPRSSVSKLLGYNYAGFGFAPYGPFWREMRKLSVVEILSARRLNELKDVRISELDACIQDLYSLGKDNNWISPIEVVMSEWFEHLTFNFVLRMIAGKRYFDNAVHGNEEARGAIIAIKKFLSLSGAFVPSDVFPFLERLDLKGYLGSMKHVAEELDCLVGSWVEEHVMRLKSEPGSRHDFIDVLLSAVQDTSMFGHSRETVIKATIGNLIVGGSDSTSITSTWILSALLNNREAMKRAQEELDLKVGRSRWVEESDIQKLDYLRAIIKESLRLYSAAPLLVPHEATQDCHVCGYHIPKGTRLFVNAWKLHRDPRVWSNPEEFEPERFLGSHANLDVFGHQFELIPFGSGRRACPGINMALQMLHLTFARLLQGFDMATPSNAPVDMTEGISFTMPKLTPLCVTDALKKSGLESSNLILGIDFTKSDEWIVRTLTHNSKGISAPKPPGAWPIIGHLHLLSGQVPIFRTLGAMADKHGPVFMIQLGMHPAVVVSSHEAVKECFTTNDKVFASRPRSSVSKLLGYNYAMFGSAPYGLFWREMRKLSVVEILSARRLNELKDVRISELDACIKDLYSLGKDNNWISPIKVVMSEWFEHLTFNFALRMIAGKRYFDNAVHGNEEARGAIITIKKYLSLSGAFVPSDVFPFLERLDLQGYLGSMKHVTEELDCLVGSWVEEHVMRLKSEPGCRHDFIDVLLSTVQDTSMFGHTRETVIKATIVNLIVGGSDSTSITSTWILSALLNNREAMKHAQEELDLKVGRSRWVEESDIQKLDYLRAIIKESLRLYPAAPLLVPHEATQDCHVCGYHIPKGTRLFVNAWKLHRDPRVWSNPEEFEPERFLGSHANLDVFGHQFELIPFGSGRRACPGINMALQMLHLTFARLLQGFDMATPSNAPVDMTEGISFTMPKLTPLRVMLTPRLPSHLY* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1542 1029 Gene3D Cytochrome P450 542 1027 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 Coils Coil 331 351 - -
Vvi4g1542 1029 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 962 971 IPR017972 GO:0005506|GO:0016705
Vvi4g1542 1029 FunFam Cytochrome P450 82C4 28 510 - -
Vvi4g1542 1029 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 FunFam Cytochrome P450 82C4 538 1021 - -
Vvi4g1542 1029 CDD CYP82 72 508 - -
Vvi4g1542 1029 CDD CYP82 582 1023 - -
Vvi4g1542 1029 SUPERFAMILY Cytochrome P450 549 1023 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 Pfam Cytochrome P450 39 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 Pfam Cytochrome P450 549 1012 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 Gene3D Cytochrome P450 29 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 SUPERFAMILY Cytochrome P450 39 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Vvi4g1542 1029 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS P450 superfamily signature 960 969 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS P450 superfamily signature 969 980 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PRINTS P450 superfamily signature 881 892 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1542 1029 PANTHER CYTOCHROME P450 82C3-RELATED 537 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1542 Vvi-Chr4 23261748 23272920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1542 38 508 Cytochrome P450 AT4G31940 51.143 3.64e-164 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1542 - - vvi:100258522 1022.31